RNA id: XM_021572529.2



Basic Information


Item Value
RNA id XM_021572529.2
length 478
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110496560
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56728341 ~ 56737381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTAATGCGTTTTCTTGGGGCGTAGCCACGAGACGGTACAGAATATGCACTGTGTCAAGTTTCTGACACACTTTTTAAAGGTGGGGTAATTTACCTGAGAATCAGACACACTTTCATCTTCCAACAGGACAGAGAGCAAGTTGCAATGGGGGACACAGAGAAAGGGAAGAAGGCTTTTGTCCAGAAGTGTTCCCAGTGCCACACGGTGGATGAGGGGGGACGACACAAGGTGGGACCTAACCTCTGGGGCCTGTTTGGCCGGAAGACAGGACAGTCACCTGGATACTCATACACACAGGCCAACATCAACAAGGGTGTAGTCTGGGAGGAGAAGACACTAATGGTCTATCTAGAGAACCCTAAGAAGTACATCCCAGGTACCAAGATGATCTTTGCTGGTatcaagaagaagaaagagagagaggacctgATAGCCTATTTAAAGGATGCCACTTCGTAGACAGACACCGtatcatact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1790936 lncRNA downstream 24232 56701428 ~ 56704109 (-) False G1565404
TU1790937 lncRNA downstream 24232 56701428 ~ 56704109 (-) True G1565404
TU1790930 lncRNA downstream 31204 56696822 ~ 56697137 (-) False G1565401
TU1790931 lncRNA downstream 31204 56696822 ~ 56697137 (-) True G1565401
TU1790848 lncRNA downstream 161010 56567096 ~ 56567331 (-) True G1565323
TU1790995 lncRNA upstream 42575 56779954 ~ 56780159 (-) True G1565461
TU1791075 lncRNA upstream 107895 56845274 ~ 56849179 (-) False G1565536
TU1791076 lncRNA upstream 110030 56847409 ~ 56849179 (-) True G1565536
TU1791117 lncRNA upstream 158820 56896199 ~ 56896418 (-) True G1565574
TU1791118 lncRNA upstream 160164 56897543 ~ 56897751 (-) True G1565575
XM_036953314.1 mRNA downstream 2033 56704852 ~ 56726308 (-) True LOC110496559
XM_036953300.1 mRNA downstream 1874497 54842434 ~ 54853844 (-) True LOC118941190
XM_021572521.2 mRNA downstream 1888419 54827717 ~ 54839922 (-) True LOC110496552
XM_021572874.2 mRNA downstream 2075409 54636849 ~ 54652932 (-) False LOC110496860
XM_021572507.2 mRNA downstream 2176024 54525695 ~ 54552317 (-) True tpd52
LOC110496863 mRNA upstream 321158 57058537 ~ 57061029 (-) True LOC110496863
XM_021572540.2 mRNA upstream 330461 57067840 ~ 57070602 (-) False LOC110496566
XM_021572539.2 mRNA upstream 336083 57073462 ~ 57081449 (-) False LOC110496565
XM_036953320.1 mRNA upstream 336083 57073462 ~ 57083730 (-) False LOC110496565
XM_021572536.2 mRNA upstream 336083 57073462 ~ 57084451 (-) False LOC110496565
TU1790620 other downstream 240052 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2062698 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2075491 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 2833392 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 2852749 53874410 ~ 53875592 (-) True G1562828
TU1792637 other upstream 1290132 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 1338244 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 1430005 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 1673120 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 2131984 58869363 ~ 58870007 (-) True G1567875

Expression Profile