RNA id: XM_021572540.2


Basic Information

Item Value
RNA id XM_021572540.2
length 2107
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110496566
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57067840 ~ 57070602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGTTTTGGAACACATTGGATTGTTAGGGGTTGTTGCTGTCAGGATCTCTAAATATCAGTTTATGGGGTGTTTTTTCCCAGAGAGAACTCTACATGAATGGCTAACTTTGCTAATGACCGCATGCATAGTGTGTAGCTACTGGTGTAATTTGTGTGGCGCGGGGGCGTTCTCTCCAGACATACTCAAACAATACGAGAAAATAGGACTGCATGAGCCCGGGCAATATAGTTACTTCACTTTCACAGCGCTCAGACAGCCATTCTAAAAAAACATTCATAGTTTAGTTGACTAGGAGGCTAGGGGACAATAAACTGGGGTGGGCGTAAAAAAGGTGTAAATAAAAACAGCCGTCCCCATAGAGACAAGGCGTTCTTCACCAGAGTTTTTGGATCAATCACGCAGACAGTGGCTTCTTTTGATTAAACCCCAAATTGTCATTGGGCAGAAGTTATCATGTGACTTGGCTCCAATTTCAACCTTGTCTCCATGAATTCAATAGTTTAATAGCTGTTCGGTCACCATACGGCCGTAATCAGTGAATTTGAAAAAAATGCCACCACCTCTTTCTCATTGAGCCGCTACATTTATAAAAATACGCGCAGCAAACTTTCCTCGGCTCTCAGCGAGCGGAGATGAATTACGAATTCGAGCGAGAGAGCGGTTTTATCAATAGTCAGCCTTCGCTTGCTGAGTGCCTGACATCTTTCCCCCCTGTCGGTGATTCATTTCAAAGTTCATCAATCAAGAGCTCGACGCTTTCACACTCGACACTGATTCCTCCTCCTTTTGAGCAGACCATTCCCAGCCTCAACCCAGGCATCCACCCGAGGCATAGCCGGCCCAGACACAGCCCCGATGGATGCATCCCGCTGCCCACTGCCTCCCTACCCCCGGAATACCCCTGGATGCGAGAGAAGAAAGCCTCCAAGAAGAATCACCTGCCGACTTCCACCGCGACTGCCATAACGAGTGGACCTGTATGCTTCTCCCCGGAAGGTTCGCCGGAGATTctagagagtggaggagagggttCCCGGCGGTTGAGGACTGCGTACACCAACACACAGCTcctggagctggagaaggagTTCCACTTCAACAAGTATCTTTGCCGACCGAGGAGGGTGGAGATAGCCGCCCTGCTGGACCTCACCGAGCGGCAGGTCAAAGTATGGTTCCAGAACCGGCGCATGAAGCACAAGAGGCAGACCCAATGCAAGGAGAACCACAATGGCGAAGGGAAAGAGCCGAGTGCTGAGGACAGGACCCAGAGcgacgaggaggaggatgagggctCGGTGTTTGAGCAGAGCCTCAATATAGTGACCGGGGCCCTTATGGAGAGAGGGGCCTGCTCCTTTCAGCAGAACTCACTCAGTACTTCCCAGCAGCTCCAGAATGTTGGCCCGCACAATGGCGTGGCCCAGAGTTACACAGTTTTACCACTGAGCAGCAATGACAAAAATCTGAAGCATTTCCCCAACCCGTCACCCACTGTTCCAGGCTGCGTGTCAACAATAGGGCCCGGCTCTGCACCTGGCCAGGACAATGGCGGTAGTCCCGCGGCCCTGGACGTCTCAATACAAGACTTCCAAGTATTCTCCTCGGATTCTTGCCTTCACTTCTCTGATGCCACCTCGCCTAGTGTGTCAGAATCCCTGGACAGCCCCGTGGACAATCTGGACATATCTACCGACAACTTCTACTTTTTCTCGGAGTCATTAACTACAATTGACTTACAGCATCTGAGCTattgaaatcaatgaaaaatAGAGCGAGACTTTCACCTGGAACatttaaagaaagaaaaaaactcCGGTATTAACTATGAAGTAAATTTTGGTGGTTGTTTGATATGATCGGCACATTTCCTTTTTATTGATTAATTGATTAGGCCTAGTCGATTAATTCAAGGTAAGAGTCTGGAAAAATATACCATTGTGGCCTGCAATTACAATAACACAATTATTTCTTAAGATGCAATAATATGGGTATGTGAAAAGTTGCACAATAGTATGAATTCTGGTCATTTTATTTTTGTATAGCTTACAGTGCCATGGATATTTTTGTTAGAATAAATCTGACTTGCTATAAGGAACTTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791264 lncRNA downstream 10744 57056799 ~ 57057096 (-) True G1565715
TU1791228 lncRNA downstream 31349 57036254 ~ 57036491 (-) True G1565681
TU1791221 lncRNA downstream 35134 57032409 ~ 57032706 (-) True G1565674
TU1791218 lncRNA downstream 36369 57031271 ~ 57031471 (-) True G1565671
TU1791212 lncRNA downstream 44462 57023161 ~ 57023378 (-) True G1565665
TU1791341 lncRNA upstream 2983 57073585 ~ 57074005 (-) True LOC110496565
TU1791346 lncRNA upstream 5526 57076128 ~ 57076570 (-) True G1565781
TU1791340 lncRNA upstream 31114 57101716 ~ 57102286 (-) True LOC110496569
TU1791354 lncRNA upstream 36243 57106845 ~ 57107370 (-) True G1565789
TU1791357 lncRNA upstream 44955 57115557 ~ 57116585 (-) True G1565792
LOC110496863 mRNA downstream 6811 57058537 ~ 57061029 (-) True LOC110496863
XM_021572528.2 mRNA downstream 330459 56728341 ~ 56737381 (-) False LOC110496560
XM_021572529.2 mRNA downstream 330461 56728341 ~ 56737379 (-) False LOC110496560
XM_036953314.1 mRNA downstream 341532 56704852 ~ 56726308 (-) True LOC110496559
XM_036953300.1 mRNA downstream 2213996 54842434 ~ 54853844 (-) True LOC118941190
XM_021572539.2 mRNA upstream 2860 57073462 ~ 57081449 (-) False LOC110496565
XM_036953320.1 mRNA upstream 2860 57073462 ~ 57083730 (-) False LOC110496565
XM_021572536.2 mRNA upstream 2860 57073462 ~ 57084451 (-) False LOC110496565
XM_021572538.2 mRNA upstream 2860 57073462 ~ 57084451 (-) False LOC110496565
XM_036953321.1 mRNA upstream 2860 57073462 ~ 57084451 (-) False LOC110496565
TU1790882 other downstream 330493 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 579551 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2402197 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2414990 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 3172891 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 956909 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 1005021 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 1096782 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 1339897 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 1798761 58869363 ~ 58870007 (-) True G1567875

Expression Profile