RNA id: XM_021572539.2


Basic Information

Item Value
RNA id XM_021572539.2
length 2761
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110496565
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57073462 ~ 57109628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggggcaggattTGAAGTGACTTTTTGTGTCCAAGGCACTAGTTCATTTGCATAATGTTCCTTGTCTATGGTGACGCTATGTTTCGGGGAGTTCACTGTTCTGGTGATGTCTGCATGATACTTGTGCCCAAACACATAGTCCATAGCCCTGGCTAGGTTTAATATTGGTATAAGACATGGGCACTGCTCTAGCATGTGATAAGTTCAACCCCGAGGGCCGATAGCGGTTATCTGGACGACCCGAGTGCTCGCGCCTGCTTTCATTATCTTGGTTTACCCTTCAAACATCGAACAGAAAAAAATGGATTTTGTTTCTTCTACACACAGAGCCTCTCGCCCCTTCCCTTTTTTGTTGTGGCGGATGAGTCCTGTATGAGCTTGGCGCATGCTGGTGCTGCTGCTTATACCCCAGCTCGCTCTGCCTAAACTTTTTCTCCGGACTACTGTTTTGATCGATTTCGTCGCTGAATGAGAACATATTGCCTTGTGCTTTGCATTCATCGTCAGAGGATAAGGTTCACCCGAGGAGGCCATTGGCGAAGAGGTGTCACGTGACCAAGGGGTGCCAATGTTATTCAACAAGGGTGTCAAGACCCTGTCAGTTTCTGAAATAAATATTGGGAAACGGCGAGATGCAGAAGGCAACCTACTACGACAGCTCCGCAATTTACAGTGGCTACCCGTATCAAAGCGCAAATGGCTTCAGTTATGATGCCAATCAGGTCCAATATCCCCGGGCCTCTCATGTGGAAAGTGAGTACCATCGACCAGCCTGCTCCTTGCAGTCCCCAGACGGCTTGGTCGCCCTGCAGAAACCGGGGGAGATGGCGGAGAACTGCGATAGGGGTACGGCCATCCAGGCAGCGCAGCCACCCGTCCTCACTGAAACCAATCAACCGCAGATGTCGGTGTCTGTCCCACCACCCCCTCCCCAGTCACAGTCCCCCGGTTCTCTCAACCAGAACACGAGCAACGGCTCCTGTCAACCCAACTCAAAGAGCTCGGTGCACAGCTCGCCGACCACCACCCGGAAGCACATCTTCCCCTGGATGAAAGAGTCCCGTCAGAACCAGAAGCCTAAAACCAGTAGCTCCAGCTCAGTTGAGAGTTGCCCTGGAGACAAGAGCCCCCCGGGCGGGTCAGCCGCGTCGAAGAGAGCCCGGACGGCTTATACCAGCGCACAACTGGTGGAACTGGAAAAGGAGTTCCACTTCAACCGCTACCTCTGCAGACCCCGCAGGGTCGAGATGGCCAACCTGCTCAACCTCACGGAGAGGCAGATTAAGATCTGGTTCCAGAACCGCAGGATGAAGTACAAAAAGGATCAGAAAGGGTGTGGCATGATGCCCTCTCCCGGGGGACAGTCCCCTCGGAGCCCCCTCGGCCCATCACCCGGAGGCGGGGGTGGAGGATACCTCAACTCTATGCATTCTCTGGTTAACAGTGTACCCTATGAGTCCCAGTCGCCAACGTCTTACAATAAGCCCGCTCATAATGCATACGGTATGCCTACGTCATATCCCCCTCCATTGAACAGCTCCCTAAACAACTGCCCGCCCTCTCAGAAGAGGTATCCCGGGACTGGCGGCTCGGCCACGCCCGAGTATGACGCGCATCCTCTTCAAGGAAATGGCGGCTATGGGACGCACTTGCAGCAGGTCAGCCCTGTGTATGTAGGCGGAGGTTACATCGATTCGATGCCCAACAACAGGGCCTCCGTTTTCGGCCTGACCCATCTCTCGCACCCGCCGTCCACAAACATGGACTACAATGGAGCAATCACTATGGGCAATAGTCACCATCAAAGAGTGTGCGATCCAAACCCGACATACACAGACCTTAATACGCCGCACTACTCTCAGGGAAGAATTCAGGAAGCGCCCAAACTGACACATCTGTAGCCGGGTTGCAACCTGGATCACTCCGCCCCATTGTCTTACCTGACGAACCACCATCGCTTTGTTTCTTCTCTTCTTTAGTAGCTTTTTCCACCTTCTCTTTGTTCTAGGTTATGTTTGTTCTTTTTTTAATATAGTTTAATGTGTGAAGTAGCATAGGAAAGTAATCACGCTTGCTTCAAATGTTCACTCTATTTGCTATAGTGTTATTGTTCCGCACAGACCTATTATCTGAGACAACACGCGCGGGGGCACATACGCATAGACCTATTTAATCTTTAACTTGTTTCTAAAAACAAATCAAACAGGGTATATGAACAAATCTTATGGTATTATTTTAATGTGAATGTGTTAGTTTTTTGGTATTTATCCGCAGTTGaagatttgttttgtgttattattttGCATTTTGTTGCACTTGTGGAAGGATCCTTAAAAAAGGGAGGCCTGGAAGCTCCAGCCTACGATCTAACCAGCTTGTGTTCTGTTGGACTttcaaaatgttatttatttatatgaCGTTATATGGAGTTCTTTAGTATTATTTGACCCCCCTGTGCTCTTTGTATGTGGAGAGAAGGCTATTGGAACCAGGCCTAGGCTCTAGTTCTACCCCTTACCTGACAGTAGACagacgacagagagacagacagacactgatatGTTGGTGTTATTTGTTTCTTCTTCGAGGAGGTATTTTATTTCTCTACGAATGCAAATCAACCAGTCACGCTTGGAAGGACGGACAGATATTAGACGTTTCTTTATTGAACAAATATTCTAGATATCACCAAGTTTCTTTTTCAGTGTCATTACATTCCATGCTGCTCCAGTTCGAATAAATAAAGAAATGAATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791342 lncRNA downstream 5201 57067888 ~ 57068261 (-) True LOC110496566
TU1791264 lncRNA downstream 16366 57056799 ~ 57057096 (-) True G1565715
TU1791228 lncRNA downstream 36971 57036254 ~ 57036491 (-) True G1565681
TU1791221 lncRNA downstream 40756 57032409 ~ 57032706 (-) True G1565674
TU1791218 lncRNA downstream 41991 57031271 ~ 57031471 (-) True G1565671
TU1791340 lncRNA upstream 20267 57101716 ~ 57102286 (-) True LOC110496569
TU1791354 lncRNA upstream 25396 57106845 ~ 57107370 (-) True G1565789
TU1791357 lncRNA upstream 34108 57115557 ~ 57116585 (-) True G1565792
TU1791366 lncRNA upstream 48028 57129477 ~ 57129703 (-) True G1565795
TU1791368 lncRNA upstream 49412 57130861 ~ 57131087 (-) True G1565797
XM_021572540.2 mRNA downstream 2860 57067840 ~ 57070602 (-) False LOC110496566
LOC110496863 mRNA downstream 12433 57058537 ~ 57061029 (-) True LOC110496863
XM_021572528.2 mRNA downstream 336081 56728341 ~ 56737381 (-) False LOC110496560
XM_021572529.2 mRNA downstream 336083 56728341 ~ 56737379 (-) False LOC110496560
XM_036953314.1 mRNA downstream 347154 56704852 ~ 56726308 (-) True LOC110496559
XM_021572543.2 mRNA upstream 9338 57090787 ~ 57094267 (-) True LOC110496568
XM_021572541.2 mRNA upstream 20777 57102226 ~ 57105455 (-) True LOC110496567
XM_021572544.2 mRNA upstream 20777 57102226 ~ 57114109 (-) False LOC110496569
XM_021572545.2 mRNA upstream 36019 57117468 ~ 57122355 (-) True LOC110496573
XM_021572546.2 mRNA upstream 42678 57124127 ~ 57130231 (-) True LOC110496574
TU1790882 other downstream 336115 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 585173 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2407819 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2420612 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 3178513 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 946062 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 994174 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 1085935 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 1329050 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 1787914 58869363 ~ 58870007 (-) True G1567875

Expression Profile