RNA id: XM_021572541.2


Basic Information

Item Value
RNA id XM_021572541.2
length 2583
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110496567
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57102226 ~ 57105455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAACATGTGTTTAAATTATGACATGTGTTTAGATTACAACATGTGTTTAAATTATGACATGTGTTTAAATTATGACATGTGTTTAAATTATGACATGTGTAAATTATGACATGTGTTTAGATTACAACATGTGTTTAAATTATGACATGTGTAAATTATGACATGTGTAAATTATGACATGTGTTTACATTACAATATGTTCTGAAAATGGACTTTAGTTATCCATATTTGCAAAAAAACGGAAGCAAAATGTATATTATTGTTATGCCATTCATGTTTTCTAGAGATGAGGCTATTCATTACACACAGCTGCAAGAttttatgcagatttttttttgtgcCTAATTATCTAATTATCATAATTCAGTCATAATTTGTTGATCAAAACCTGGGTTATTTTCATTCAGACTTCTAAAAGTATTTATGGAATTTCACTTGAGGGGTGAAGTGTTGTCTATTGAGACTACTGTATTGTAGCCTACTTTCTGTCGTCATCTAAAATAAATGTACGTTGTTTCAAATGCCACATTTTTTGCGTATCTAACATTTAGATGACTGCCTTTCTATTAGATTGGATCATAACTGCAGGTTGTGACGGCTCTATGCATATCAGTAAACTAAGCTTCACCTGTAAAATTATTCTTAGTGATAAACACATTTGCAATTTATTCAAATGTCCAAAGAGTTGATTCATATAGGATATTCCAACATGGTTTAACGAAATATTTAACCAAATTTAAGGTTctagacaaatatttttttatatattttttttcttgtaCTTGTTTTTTCTTGTAGTGTACGTGTTTTATTCCCAACGCGACGGTTAATGAGGATAACATTGAATACAGAtttctctctatactctctatcAGTGGAGAGGTTGCATATTCAGTATACACTGCGTTTCTTGTTGTATTGTTTGGGGAGACCATGCTTTTGCCGCAATGGTCGTTAACCTCTGAACGACCCCGTTCGGAGCCCACGCCTCAAACACTGTCGCAGGCAGTGCCAGACTGCGACCAGAAGATGGCGCGCGACGACAATCCAAGAGACGCAACCCGGGCCCCGCGAGCGCCCTGCCTAGGCGCATACCCAGGCGCGCCTCCCTAACATCCCACCAAGATTTCCTATTTGTGCACGAGTTTACCTCTGGAGGTCATCAAGCAGGATTTACGACTGGTCAACAAAAGCACGTGATTCTCAGCCGTACCCCATATTTGGGTGCCTACGTAAGAGAGAATCAAGTACATGTTCTACTCATTTCCATAATTCATCATAAATTGTGCAAGGGTGCTATAGAACGCGCAAAACCATCAAGAGCCACAAATCAAGTACACACGTTATTACTTTCTCCACAAAAAAAGCAACAAATACCTGCTAAACAACAATATTGGAATTATCAACCAATGAGCTCCTATTTTGTAAACTCATTCTGCGGTCGCTATCCCAATGGCGCGGATTTCCAGTTACATAATTATGGAGACCACAGCTCTGCAAACGAGCAATACAGGGACCCCACGACCATGCATTCCAGCAGGTACGGTTATGGCTACAACGGGATGGACCTCACTGTCAGTCGCGGTAACGGGCACTTTATGGCCAGCGTGCGGGCACAGGGCTACTCCCCGAACCAGTCGGTGGCGACAACAACGTCCTCGGTCGAGACGCCCAGGTACACCCAGCCCGCGAGTGCCACCGAGACGACGTCCCTCTCGCCTCCACCTGACCCGCTCCCGTGCTCCTCCTCTGTCGCGAGCTGCTCGTCTCCGGTCAGCGAGTCTCAACCTCAACACCGAGACATAAAGAACTCCATAACGAGCCCCTGCACGACCCCGAGTTCGAATGGAGGCACGCTGTTGAACCGGGTGTGTGTGTCCAAAGCGTCCCCCCTCCAGGAAGAGAAGCCCGCGGGAAGGGCGCAGACAACTTCCCAAAATGTCACCGACGGTGCCCAGCCCCATATTTACCCCTGGATGAGGAAACTGCACATAAATCATGACAGTCTGACCGGACCAGAGGGGAAGAGGGCGAGGACAGCCTACACGCGTTACCAGACACTGGAGCTCGAGAAAGAGTTTCACTTCAACCGTTATCTGACCCGCAGACGGAGGATCGAGATAGCGCACGCGCTCTGCCTATCAGAACGCCAGATCAAAATCTGGTTCCAGAACCGGAGGATGAAGTGGAAAAAGGACAACAAACTAAAAAGCATGAGCATGGCAGCGGCAGGGGGTATAGGTTACCACCATCCCTGATACTCGGTTCCCCGATGAGCactaataaaataatacaaaGCTTAGGAAAACTTCCCATCATGTCAAAAGCCCAAGAGACTTTCCGAGGGCTTCTTAGGACAGTGAACATCCACGTGTCCATGCAAGCTCCAGCCTTTAAAAATAATTTCCtccttatttattttattttgaccaTGATAATGCTTGTGTGAGTAAAAACTTGCGTTCTGTAAATGTTTGTCTTAAAGGAACAACCAATGGGAAATACATGTTTGTTTAACTTATTTCTTGTTCAAAATTGAAAAAACTTTAAAGTTACCACAAATAAGTCTATTAACTATCCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791346 lncRNA downstream 25656 57076128 ~ 57076570 (-) True G1565781
TU1791341 lncRNA downstream 28221 57073585 ~ 57074005 (-) True LOC110496565
TU1791342 lncRNA downstream 33965 57067888 ~ 57068261 (-) True LOC110496566
TU1791264 lncRNA downstream 45130 57056799 ~ 57057096 (-) True G1565715
TU1791228 lncRNA downstream 65735 57036254 ~ 57036491 (-) True G1565681
TU1791354 lncRNA upstream 1390 57106845 ~ 57107370 (-) True G1565789
TU1791357 lncRNA upstream 10102 57115557 ~ 57116585 (-) True G1565792
TU1791366 lncRNA upstream 24022 57129477 ~ 57129703 (-) True G1565795
TU1791368 lncRNA upstream 25406 57130861 ~ 57131087 (-) True G1565797
TU1791378 lncRNA upstream 35662 57141117 ~ 57142923 (-) True G1565803
XM_036953316.1 mRNA downstream 1179 57073462 ~ 57101047 (-) False LOC110496565
XM_036953319.1 mRNA downstream 7715 57073462 ~ 57094511 (-) False LOC110496565
XM_021572543.2 mRNA downstream 7959 57090787 ~ 57094267 (-) True LOC110496568
XM_021572535.2 mRNA downstream 16869 57073462 ~ 57085357 (-) False LOC110496565
XM_036953322.1 mRNA downstream 17387 57073462 ~ 57084839 (-) False LOC110496565
XM_021572545.2 mRNA upstream 12013 57117468 ~ 57122355 (-) True LOC110496573
XM_021572546.2 mRNA upstream 18672 57124127 ~ 57130231 (-) True LOC110496574
XM_021572547.2 mRNA upstream 26010 57131465 ~ 57134795 (-) True LOC110496576
XM_021572548.2 mRNA upstream 40694 57146149 ~ 57148279 (-) True LOC110496578
XR_005037334.1 mRNA upstream 173611 57279066 ~ 57284390 (-) True LOC110496951
TU1790882 other downstream 364879 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 613937 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2436583 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2449376 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 3207277 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 922056 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 970168 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 1061929 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 1305044 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 1763908 58869363 ~ 58870007 (-) True G1567875

Expression Profile