Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1791308 |
| length | 1055 |
| lncRNA type | read_through |
| GC content | 0.49 |
| exon number | 2 |
| gene id | LOC110496571 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 57109128 ~ 57112335 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1791296 | lncRNA | upstream | 2342 | 57106760 ~ 57106991 (+) | True | G1565747 |
| TU1791295 | lncRNA | upstream | 2747 | 57106358 ~ 57106586 (+) | True | G1565746 |
| TU1791293 | lncRNA | upstream | 6538 | 57102409 ~ 57102795 (+) | True | G1565744 |
| TU1791290 | lncRNA | upstream | 10467 | 57098542 ~ 57098866 (+) | True | G1565741 |
| TU1791280 | lncRNA | upstream | 21522 | 57087260 ~ 57087811 (+) | True | G1565731 |
| TU1791312 | lncRNA | downstream | 2937 | 57114900 ~ 57115405 (+) | True | G1565752 |
| TU1791313 | lncRNA | downstream | 4676 | 57116639 ~ 57116947 (+) | True | G1565753 |
| TU1791321 | lncRNA | downstream | 12189 | 57124152 ~ 57125142 (+) | True | G1565756 |
| TU1791325 | lncRNA | downstream | 18328 | 57130291 ~ 57130610 (+) | True | G1565760 |
| TU1791323 | lncRNA | downstream | 25241 | 57137204 ~ 57140625 (+) | True | LOC110496577 |
| XR_005037515.1 | mRNA | upstream | 10027 | 57088552 ~ 57099306 (+) | False | LOC110496572 |
| XR_002469577.2 | mRNA | upstream | 10027 | 57091799 ~ 57099306 (+) | True | LOC110496572 |
| XR_002469574.2 | mRNA | upstream | 22323 | 57085681 ~ 57087010 (+) | False | LOC110496570 |
| XM_036953315.1 | mRNA | upstream | 233315 | 56861497 ~ 56876018 (+) | False | LOC110496564 |
| XR_002469579.2 | mRNA | downstream | 25525 | 57137488 ~ 57140623 (+) | False | LOC110496577 |
| XM_021572951.2 | mRNA | downstream | 51162 | 57163125 ~ 57167993 (+) | True | LOC110496950 |
| XM_036953326.1 | mRNA | downstream | 180787 | 57292750 ~ 57328605 (+) | False | tax1bp1a |
| XM_036953325.1 | mRNA | downstream | 180789 | 57292752 ~ 57336282 (+) | False | tax1bp1a |
| XM_036953324.1 | mRNA | downstream | 180790 | 57292753 ~ 57336282 (+) | False | tax1bp1a |
| TU1791219 | other | upstream | 77370 | 57031621 ~ 57031963 (+) | True | G1565672 |
| TU1790095 | other | upstream | 940130 | 56028938 ~ 56169203 (+) | False | LOC110496862 |
| TU1790119 | other | upstream | 1057540 | 56050588 ~ 56051793 (+) | True | G1564638 |
| TU1789919 | other | upstream | 1200399 | 55908250 ~ 55908934 (+) | False | G1564470 |
| TU1788910 | other | upstream | 1970102 | 55138648 ~ 55139231 (+) | True | G1563547 |
| TU1791820 | other | downstream | 739258 | 57851221 ~ 57863046 (+) | True | LOC110496591 |
| TU1791842 | other | downstream | 804652 | 57916615 ~ 57920646 (+) | True | LOC110496592 |
| TU1791846 | other | downstream | 829134 | 57941097 ~ 57946763 (+) | True | G1566224 |
| TU1792104 | other | downstream | 1252293 | 58364256 ~ 58377006 (+) | True | G1566445 |
| TU1793356 | other | downstream | 1758936 | 58870899 ~ 58873690 (+) | True | LOC110496618 |
