RNA id: XM_021572951.2


Basic Information

Item Value
RNA id XM_021572951.2
length 2653
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110496950
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57163125 ~ 57167993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCCGCACTCTGAAGCGCTCGCCTCGCAGGATCAGAACGtacatccccctctcttctctcctctcatttcaaTCAATTCCTCTACTCTTTTTTCTCCACTCTCACGACTGAATCCCCTCGCCATCCGTAGCCTGCAGTGTCACAGACAGCTTGGCTCTCTCCATAGTGATTTGGCGCCCGTTCATTCCACGCGCGTTCGTTCGTTCGTCGGTAATGGAAAACAGAAAGGAGATGGTGATGCTCGCGGAGGGAGGTCAACTTGGCACGGTGGTTGGCAAGACGGGCTCTAATTTCTCGGAAGCAGTTGGAAGCCCAGCGCAAGAACCGCAAGGAAAGACGGTCCACAGGAACTGCCTGAGCCCGGGTTCTGCACCCTACTCGCGAGACAGAGCGGACGAAGAGGTGGAAGGCGCACAGGGACGCGTGTGCGCTGATGTAAGGCCGGTTGGCATGTCCTCGTCTACCGAGAGACACCGGATAGATCACACCAACAAAGAAACCAGCAGCTCTGACACTGAGTCAGACTTCTATGAGGAAATTGATGTGAGCTGCACGCCAGAAAGCATGGACTACCCCAATGGGAAAGGTCGAAACGGTGATTCCCCCTGCCACCCAAGTGACAGCGGCATGGATCTTGGTAAGATGGGTTCGGGACAGGGCTCGTTGTCCTACGGGGCCGACGCGATGCGACGGTACCGGACAGCATTCACTCGGGAGCAAATCGGTCGGTTGGAGAAGGAATTCTACCGGGAGAATTACGTGTCCAGGCCGAGGAGATGTGAACTGGCGGCTTCACTAAATTTACCAGAGACCACAATCAAGGTGTGGTTCCAGAACCGCCGAATGAAGGACAAGCGGCAGCGTCTGGCCATGACGTGGCCTCACCCTGCCGACCCCGCCTTCTACGCCTACATGATGAACCACGCAGCCGCCACTGGGAATCTCGGTTACTCCTTCCCGTCCCACCTGCCATTACCGTATTACTCCCACCTTGGGGTCGGAGCCGGCTCGGCCTCCTCCGCTACCCCATTCTCCAACCCACTCAGGTCCCTCGACAGTTTCCGGATGTTGTCTCATCCCTACCAGAGGCCAGAGCTGCTGTGTGCGTTCAGGCACCCATCCCTGTACCCTAGCCCGGCCCACAGCCTCGGTCCCGGGGGGAGCCCCTGTTCCTGCCTCGCCTGTCACTCCGCTCAAACAAACGGCTTTCCACAGAGGCCCACCGGGTCAGACTTCCCGTGCTCCCCAACGAGCAGGACTGACACGTTTCTGACGTTTACACCGTCGGTGCTGAGCAAGTCCTCGCCGGTGACTttggaccagagagaggaggtgcCATTGACCAGATAAAACGAAGAGAACACATGTGTTCATTGGACTGAGTCAATGAAGCGTAGAAGAGGGCCATACGCTTTTACCATGATGAGCTTTTATCAAACTTAAAGAAAACACATGAACAAGACTCAAACAGCATGAATATAACGCTCGTGTGGAGCAGACTCCATACCCGCAGCAGCATAAGCGACAGGTACTGCAGCGCGTGCTGTTACATACACCTGCTACATTACAAAAAGGAGAGATGAGCGAGCTCGGAGTGCAAATAAATAGCCTACCCAGTTTTTAAGCTATATGTTTTCAAGCACCAACGCGATGATCTCACACATCATGCTATCCACTGGAAAAAATAAGTTCAGTTACAAAACCCCATGCAGACCATGAAATATTCCGAGATCGGACAAAAAACACATTTGATTTATCTAAGATTAATTTGGTGCGAAGAAAGAGAGAGCCCAGGCGGACTGGGAATTACAGACAAACGTTTATCTCTGTGATGGATGGTGTTAACGGTTTATCATTATTTGTAGTCTCTTCACATGTCCAAATTGACCTACATATATGGGTAGGCTAGTTACACTAGAATGATGTTTTCCATCTTATTTTTTTAACAAGGGAATTTGTTAACAGACTGCACCGTCTCATTATGGCTCCCTCTCCCTGCCCGAGTGTCCCTTTTTTGAAGGTCTGGGTCGGAAATGTGCAGATGCTGGTAAAATTAGTAAGTGATGTATATGTACGTGGCAGATGAATTTTGAGTGTTGAATTAATGATAATACCGGCCGCGCGCGGAGACCGGGAGGGATCGTTTCTGCCAAACCGTAACAAGGCGCCAGGGGAACGGATTAGCTCGCTTTGGCTTgacgggggaagagagagagacaagccaTTGGACAATCACACCAGGCAAATTAGGCCGAGTTCGCTCGAGCTGCCCATCTCACCCATATACCCTCGACTGAACACTAgccaccacctctctccccctgcccacCCCCCATTCTATTTTACCCTCAGCCAATGTTCATAAGACCGAATGCTTGGATAAATGCATTTATAACGACTGATTCTGATACTATAAGCCTTATATTTATTATACTCATTCTAAAATAGTTTGAGGAAATTGCTATTATTTCTTTGTTTCCATGTATCGCTTTGCACTGTTACTGGCATAGTATTTCATCGAAATAACCCTGTCATGTTTTAGGGAAATTGCTGCAAAAAGGCTCAAGAGAGCGAATTCACTCTGTGGTAATTTTTGCTGAATATATTGTTGGATTGTTCTGGACTTCAAATTTGCAATAAACAGCATTTCA

Function

GO: NA

KEGG:

id description
K09320 EVX; homeobox even-skipped homolog protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791323 lncRNA upstream 22500 57137204 ~ 57140625 (+) True LOC110496577
TU1791325 lncRNA upstream 32515 57130291 ~ 57130610 (+) True G1565760
TU1791321 lncRNA upstream 37983 57124152 ~ 57125142 (+) True G1565756
TU1791313 lncRNA upstream 46178 57116639 ~ 57116947 (+) True G1565753
TU1791312 lncRNA upstream 47720 57114900 ~ 57115405 (+) True G1565752
TU1791414 lncRNA downstream 8563 57176556 ~ 57176764 (+) True G1565839
TU1791427 lncRNA downstream 30892 57198885 ~ 57199248 (+) True G1565852
TU1791433 lncRNA downstream 45229 57213222 ~ 57213440 (+) True G1565858
TU1791453 lncRNA downstream 77169 57245162 ~ 57245490 (+) True G1565875
TU1791455 lncRNA downstream 79628 57247621 ~ 57247981 (+) True G1565877
XR_002469579.2 mRNA upstream 22502 57137488 ~ 57140623 (+) False LOC110496577
XR_002469576.2 mRNA upstream 51127 57109354 ~ 57111998 (+) False LOC110496571
XR_005037515.1 mRNA upstream 63819 57088552 ~ 57099306 (+) False LOC110496572
XR_002469577.2 mRNA upstream 63819 57091799 ~ 57099306 (+) True LOC110496572
XR_002469574.2 mRNA upstream 76115 57085681 ~ 57087010 (+) False LOC110496570
XM_036953326.1 mRNA downstream 124757 57292750 ~ 57328605 (+) False tax1bp1a
XM_036953325.1 mRNA downstream 124759 57292752 ~ 57336282 (+) False tax1bp1a
XM_036953324.1 mRNA downstream 124760 57292753 ~ 57336282 (+) False tax1bp1a
XM_036953323.1 mRNA downstream 124763 57292756 ~ 57336282 (+) True tax1bp1a
XM_036953328.1 mRNA downstream 222778 57390771 ~ 57418697 (+) False LOC110496864
TU1791304 other upstream 51162 57109333 ~ 57111963 (+) False LOC110496571
TU1791310 other upstream 51285 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other upstream 51285 57109333 ~ 57111840 (+) False LOC110496571
TU1791219 other upstream 131162 57031621 ~ 57031963 (+) True G1565672
TU1790119 other upstream 1111332 56050588 ~ 56051793 (+) True G1564638
TU1791820 other downstream 683228 57851221 ~ 57863046 (+) True LOC110496591
TU1791842 other downstream 748622 57916615 ~ 57920646 (+) True LOC110496592
TU1791846 other downstream 773104 57941097 ~ 57946763 (+) True G1566224
TU1792104 other downstream 1196263 58364256 ~ 58377006 (+) True G1566445
TU1793356 other downstream 1702906 58870899 ~ 58873690 (+) True LOC110496618

Expression Profile