RNA id: XM_036953325.1


Basic Information

Item Value
RNA id XM_036953325.1
length 4142
RNA type mRNA
GC content 0.53
exon number 17
gene id tax1bp1a
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57292750 ~ 57336282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGGAATCTCTCTCCTCAGCACCGCCACCAACCCATCCCGGAAGTGACACCATCAGTTTTCACATTTCAGGAAAAGCATCAGCATCTTCAACGCTTTGACAACGGGGGTTGAAGATATTTCCACAACCGCGTTTGGACTGACACATTTGGCTTTCAAAACACAATTTGTCGCAGTTTGGATTCGTAAGACAGGTGGTGGGCTCTTTGCCCAGCAGTGTCATCGGCGTCATGGAAACATCAAACTTTGCCCATGTCATCTTCCAGAACGTTGGGAAGAGCTTCCTGCCCCAGGAGGCACTGGAGTGTTGCTACACCCTCACCTCGTACATCACCCCCAACCCCAAAGACTGGGTGGGAATATTTAagGTGGGTTGGAACACAGCGAGGGATTACTACACTTTCCTGTGGTCTCCCATGCCGCAAGACTACCAACCTGGAAGCACCGTACACAGGGCTGTGGTGttccaagGGTACTATGTTCCCAAGAGTGACGGGGAGTTTTATCAGTTCTGTTACGTCACACACACGGGTGACATCAGAGGCGCCAGCACACCTTTCCTGTTTCGCCCGGCCACGCCCACCGAGGACTGTCTTACCGTTACCGAGGATGACAGCAACTCAGACATTCTGGTGGTGACCACCAAGAGCAGTGTGctggagCAGCGTGTAGAGGAGGCGCAGCAGGAGCGCAGGGAGCTGTTGAAGACCATGCACCACCTGCAAGAGGAGAAGCAGCAGCTGCAGGAGGAGCACAGGAggctgcacagagagagagagcaggagagggagacCTGCAGCCTGCTACGCACACACAaccagGAGCTGCTACGCTCCTCCCAGGGCCTgtcagaggagagggaggaggtgaggaggagactGCAGGAGGCCACAGACCGGGTCAGACAGCTGGAGGAGGACCTACTGGGAGTCACACAGAGAGGGCTGCAGAAAGAGACCGAACTGGACTGTctgagagacaggttaaagaagctGACAGCAGATAAAGACACTCTGGAGACCCAACTGAAGAATGAGAAGGACGAGAGGGACCTTTACAAGgtccaCCTGCGTAGCACGGAGCTAGAGAACACTAAGCTGAGTGCAGAGCTGCAGATGCTGAAGGCTGTGGAGCTCAACAGAGAGGTGACCATCGCTCAGTTCCAGGAAGAACTGGACAGGCTCCGAGCCTGCGTCACTCAGAAAGAATGCCTGGAGAAAGAGCTGCACACACACGCTGTCGacaaggctGAGATGGGTCGTCTGAGGGAGAAGCTTCGCCAGGCCGAGGAGCAGCTCCAGGCGTCTCGCCAGCAGGCCGCCATGTTGGTGTCAGAGCTCCGCGACTCAGCGAGTGCCCGCGACCGCACCATGACCGAGCTGTACCGCGCCCGCCTGGAGGTCGACGCCCTCCGCGCCAGCCTGGCCGATGCCCAGGCCGAGTGCCGGCGAATGGAGACGCAGCTGGACCGCATGAGGACCACCTCCCAACAGGAAGTGggTGTGGGGACCTCCAGTGAGGGGGGATGTGTGGTGTCTGAGGCGGAGGCTGAGCTACAGAGAGAAGTGGAGGAGCTGAAGCTGCGTCTCCACATGGCCGCTGAGCACTACAAGGAGAAGTACAGGGAGTGTCAGCGACTCCGCAGGCAGGTGGCCAAGCTCAGCGAGGCCCAGgggGAGTCAAAAAGAAATGCTGCTACTGAGACGACACAGGAGCCACTGACACCCAGTCCAGAGTCACCTACAGCAgGCAATCTGGCTGCAGCTGTGCTGAGAGGAGACACTGAGAGGCCTGCTGTCCCTAACCGCAGTTACAAAGACAGGGAACACACATACACCAATACATTCTCAGGCATGGAAACCATGAGAGTAGGGGAGAAGGAGTGGAAGGGGAGAAATGGGGACGAGAGGGAagtgagtggaggagaggaagggaaagaagaGGGGAgtgtggaagaggagaggaagaaggacaGGAGTGTAGGAGGTGAGTTCATGAGCATGAAGATGGAGAGTTGGGTGGAggtggagaatgagaggaggagtgctgaagaggtggatgagaggaggagtgtggaggaggtagagaaagagcaGACTCGTTCGGTGGAGGAGGAGCTGGCGAGGATGGAGGAGAAGTGGGCGGAGCAGTGTGCTATCAACGAAACGCTCAAACAGAGACTGGCCAATGAGGAGGAGCGATTCAGGATACAGATGGCAGAGAGGGCCATAGAGGTGACAGAGCTGAAGGAGAGTCTGGCTCTGGCCCTCAGAGAGAAGGACCAACTCAAGGAGGAGCTGCATCAGTGTCAGGACCGACAGAGGGAGCAGGAGGCTGAGGGTCAAGGGTCAGAGGTCAAACAGCCTGTGTTGCTACGCTACCCCCTGCCCTACCCCCAGgacccctccccaccccccctgGTACCCCAGAGACCTGCAGAATTGCAGTACGGGAACCCCTACTCCACCGACAACACTCGAGACGGGGCAGACGGTGCCCTGTCCCCTGAGCAGATGCCCCGCCCCCCTCCCGAGGCCCCTGGTGCATGCGCCCCTCCGGCCACCCCCCCGACCCCTGGtgcaggctgggagagagaggtggtctGCATCCAGCCCTCCTCGCGAAGCATGAGCCCCCCCGACGGACTGGAGCACCCCCCCGAGGAGCCACGCAACGTCGGTGATGGGGAGCAGCCTGCCTGCAATCATCAGTCCAGCAGCAGACGCAACGACAACAGGAGCAGCTTCTGTTTTGACCCCAGtaATGAAGTCCACAAGCGCTGTCCGTTGTGCGAGGTGATCTTCCCGCCCCACTTTGAGCAGCGTAGTTTTGAGCAGCACGTGGAGAGCCACTGGAAGGTGTGTCCCGTGTGCTCTGAGCAGTTCCCCCTCGATTGCCATCAGCAGCTCTTCCAGAAGCACGTGCTCACACACTTTGATGGCCATGTGCTAAACTTCGACAACATGGAGTAacggggaggggtgtgtgtaaAAGGTTGGATTAAATTAGAATAATTCTAGGAACATGTGCTCAAATTGGGGTTTGGGATGATTTCATTTCAACTCTGACTAGGAGGGGAGATTACAAATCATCACATCAACAATTGAAAAATAATCTGGGGAAAATTACTCTTTTAAATGttctgaatttaaatggaattaacTTCAATCCTGGCCTCACATGCTACCTTtcagttaagtaaaggttaaataataaataaatgctACCTTTCAAAAACATCAAGGAGTGTGTAAGGGGGAATTTGTCAGTTCCGGTTTAGGGAAATAATCTTAAAAAATACTTTGCGTGAGAAGTTCGGATCACTTTGGTTTTGTCCCATGTTGATGATGTCATTTTTCTGCTTCGGGGTTGTAGTGTCATCACTGCATGTGTTTAGTATCCGTAGGATTCATCACTCCGTAGCCACACCTAGAAACAGGTGACATCCAGGGATGGGGAGTAGGTTGACGTTGCCTCTACATTGATCTAAGGTCCGTTTTGGGTTTTacctaatggttaaggttgggtaatctgatcctagatctgtggttaggggaAACGAATGTACAGCATGACAGACTCTTGTCAGCaaaagacatttaaaaaaataaaaaacaggaaaTAGCACTACTGTTTAAATTCGACTGCACTAAAAATGCTTCATTATTCtgaatgtatgtatatatatgagaAGTAGGACTATTATGGAGAAATGTGGCTGAATTGCTCATTACCTCAATGTTTTAGTAGTGACAGAATGATGGACCAATTGTTTTACTTCCTGGTCTCTGGATAGGCTAACATTCTCCTTCAGTAGGAGGGAAGGTAACTGGAAATATGACTGCTATAGAAAAAAAATACTGTACACCTGGCTATGGTCTCTTTCACTGTGTTAAGTCTATGTATGACCTGAGACTCATCTTTTCCTCCTTTGTCGGGGTCAGTTTCTGTTGGCTGTGCGTGCGTCTCCACATTGAGTCTCCTTTAGTTCTTGACATCTGTCTGAGATTTGACTGTTCTTTCCACGTGACCACAGTGCTGTACTTTTGGTTTCAAAGTTGCAGCTTTGAGAGTGAGTGTaggtttgtttgtatgtgtgcatTAAAAATATCTTTATGAATAAAGTACACCTGTCAAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791468 lncRNA upstream 31642 57260770 ~ 57261110 (+) True G1565890
TU1791467 lncRNA upstream 31998 57260510 ~ 57260754 (+) True G1565889
TU1791455 lncRNA upstream 44771 57247621 ~ 57247981 (+) True G1565877
TU1791453 lncRNA upstream 47262 57245162 ~ 57245490 (+) True G1565875
TU1791433 lncRNA upstream 79312 57213222 ~ 57213440 (+) True G1565858
TU1791553 lncRNA downstream 43371 57379653 ~ 57386702 (+) True G1565958
TU1791572 lncRNA downstream 93210 57429492 ~ 57429785 (+) True G1565977
TU1791525 lncRNA downstream 103435 57439717 ~ 57441240 (+) True G1565938
TU1791622 lncRNA downstream 183756 57520038 ~ 57520867 (+) True G1566024
TU1791718 lncRNA downstream 318991 57655273 ~ 57655494 (+) True G1566109
XM_021572951.2 mRNA upstream 124759 57163125 ~ 57167993 (+) True LOC110496950
XR_002469579.2 mRNA upstream 152129 57137488 ~ 57140623 (+) False LOC110496577
XR_002469576.2 mRNA upstream 180754 57109354 ~ 57111998 (+) False LOC110496571
XR_005037515.1 mRNA upstream 193446 57088552 ~ 57099306 (+) False LOC110496572
XM_036953328.1 mRNA downstream 54489 57390771 ~ 57418697 (+) False LOC110496864
XM_036953327.1 mRNA downstream 54490 57390772 ~ 57420005 (+) True LOC110496864
XM_021572556.2 mRNA downstream 105095 57441377 ~ 57476399 (+) False LOC110496582
XM_036953329.1 mRNA downstream 105095 57441377 ~ 57476399 (+) False LOC110496582
XM_036953330.1 mRNA downstream 105095 57441377 ~ 57476399 (+) False LOC110496582
TU1791304 other upstream 180789 57109333 ~ 57111963 (+) False LOC110496571
TU1791310 other upstream 180912 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other upstream 180912 57109333 ~ 57111840 (+) False LOC110496571
TU1791219 other upstream 260789 57031621 ~ 57031963 (+) True G1565672
TU1790119 other upstream 1240959 56050588 ~ 56051793 (+) True G1564638
TU1791820 other downstream 514939 57851221 ~ 57863046 (+) True LOC110496591
TU1791842 other downstream 580333 57916615 ~ 57920646 (+) True LOC110496592
TU1791846 other downstream 604815 57941097 ~ 57946763 (+) True G1566224
TU1792104 other downstream 1027974 58364256 ~ 58377006 (+) True G1566445
TU1793356 other downstream 1534617 58870899 ~ 58873690 (+) True LOC110496618

Expression Profile