RNA id: XM_021572552.2


Basic Information

Item Value
RNA id XM_021572552.2
length 6057
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC110496581
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57418906 ~ 57427510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCTTTTACTGTCTTCCTCTGGTGCTAGGCCTATGCTGTCTGGAGATATCCATTATGCACTTTGAAACGTGTGCGAGGAGGGAGTCCAAGACTGAGTCACTCAGTCCGGGATCCCCCGGGGGACCCTCGTGGGAAGGAAGGCTTCCCGTCTGCTTTCTCCATACCGAGTATCGAATCTCACCTCGCGAGCCATAGGGGGTGCGGGGGCACGCGGAAAACTCGGTCAAAGGGTTCAGCcacgtatctctctctctctctctccatgcctcgAATACAACAAGATACCGTATATGCGTCCTATCTTCCACGCATTTGATTAGATTTAGAGGACGCGTGTTTGTGTGCACGCGCAGCTCTGAATTCTGTACACTAATGGTGGTGGCGGGACGGGAGATGCGGGGGAGGGGCTgagcgcgcgcgcgtgtgtgtgtgtgctctgcgcGTGAACCCTGCGTTCAGGTCTGTAATTTGCTCCAGATGACCACTTGGGGCCGGGATATGGATCATTCTGGGGAGGTGAGCGTTTCCTCACACGGCATGACAGCGCAGCGCACAAATAAATGTATTCTATGAACCGCAGTTTTTAGCCATGGATCCAGACACCTTTTCACACTAAACTAAGTGTAGGACAACTTTCCTCCACAATGACGGAGCAACAAGTGAAAAATGGACATATGTATCGGACACCAAAGTGAGAGTGGAGAGTCGGGGTAACTGCACTTGAACACAAAGGGGGAATGCCGCATCAGAAGCTTGAGCCAACTGCCGTTTTGGAATGGATACCGGTAATTTCTTTGGTGTCATCTGCTTTCTCCTTTTCTCTTGTGACGGGTTCCTCTCGCCTTCACCCGCCAGCGGCTTCTGTCCTGAGCGCTGCGACTGCCAGCAAGCGCAGCACATCCTCTGTACAAACCGGGGGCTGCGCGCGGTGCCCAAGGTGCACTCCTCGCGGGTCCCAGAGGACGTGCTTGTCTTCAGCCTCGGCGGAAACTTCATCGGTAACATCTCCGCCTTCGACTTCACACGGTATGGACATCTTATAAGGTTGAACTTACAGTATAATCAAATACAGACCATTCACCCAAAAGCGTTTGAAAAGCTCTCCAAATTGGAGGAGCTGTATTTGGGCAACAATCTGATATCAACAATACCCCCAGAAACTTTACAGTCACTGGCAAAACTGACAACTTTGTATGGCAATAACAATGACATTAAGAAGATTACTCCAGAGCTGTTTGGTAATTTGGAGAGCATTGTGAAGCTGAGGTTGGATGGGAACGCCATAGAACTGTTACACAATTCAGTCTTCAAGAGCTTGACTAATCTACATTATCTCCATCTAGAATCGAACCAGCTGAGTCACATTCACAGAAACGCCTTTTCCAAGCTCACCAAACTGCGCTTTCTCAACCTGGCGCAGAACAAACTGACATCCGTGCGTAATGTGTTTACGTTCTCCCAGCTCAGGTCACTGAATACGTTGCTGCTCTCTGAAAATGAAATACAACACGTCGGAAACCACGTCTTTCAGAATCTGAAAAAGCTTTCTAAACTATCCCTCAGCAATAACAACATCTACCATTTGGAAAGCGAGTCGTTGAAAGGACTGTCGAGCTTGACAGAATTTCTGATTGACGGGAACGAACTGGAGAATCTTCCCGCAGGACTTCTCGACCCACTGGAGAGAGTTGAGGAGCTGGACTTTAGTTGCAACCAAATTTCCACAGTGGACCCCTCTGCTTTTGAACAACTGAAGCATCTGAGTGTTTTAAAACTCAAAGACAACAGGCTCACGAGCCTCTCCGGTAACATATTCGCCCTCAACAGCGCCCTTTACGATTTGGATCTCCATGGCAACAACTGGACGTGTGACTGCCGCCTGGGCGAGCTGAAGCAGTGGATGAAGTCGGCGCACTCTCAGGGGAAGCTGCTGACCGTTTTCCTGCAGTGTCATCACCCAGCGACACTGAGGGGGAAGTATCTAGATTATATCAACAGCTCCCAGCTGCAGCCCCCAGGGAATTGGAGCCACTTGTGTGAGACCCAGACTAGGcctgaggagagcagaggagggggTGTCCTGGAGAAAGAGctggaggacagggagagagggcagggagaggtgaggaaggagatagaaggggagaggagaggaatagaggcaGAGGAAAGGAAGGATGGAGAAGAGCATAGGGAAATtgggagtagagagggagtggggaTGAAGGAAATAGAGAAGGTGagcaggggtagagagggagaggataggaaggagggagaggaggaggtgggtatCCAAGGAGACCAGGGAGGGCAAGATGAGCGGGACAAATCCCTGTCATCAAacaggaagagggggaagaaaatATCCGCCAGCCCAAGGTCGCAACCTTCTGCTGAGGCTTCTGGGAAGCGTGAGAAAGGGAGGTGGGATTCCGTTCCGGGCCGCAGCGTTCCTCAAACACAAGCCCCTCTCCTGAACAACCCCACTCCTCCAACCACAACCTGGCCTCAGACAATTGACCACCAAAATAGCCATGGTAACCATCTCAGTGGGCCAATCACAgagctcctcacctcctctccttccacccctcgaAAAGAGGAGCGGTTTGACCTGTTCAGAGGCAGTCACGAGGACGTTATACCTGCAGTGACCGACCCCTGTGTGTTCAACCGCCACTTCATCACCAACGTGACAGTCGACCAGGTCGCCTCCAGCACGGCCACGGTCCACTGGACCACACGCGACCACAGCCGCTTTACACCGGGAGCCGGACCGGGACTAGAAGAGGTCCACTACCGAGTGCTGTTTGACCGCTTTGGGTCATCTGACCGTTTTCCTTGGTACGTGTATGCCCGTGGCGCGGCGCGGTCGGTGATGTTACGAGAACTAAGCCCAGACACCACCTACATGGCTTGTGTTGAGGGTGTGGTGGGAGGGTCTGTGTGTCAGGTGGCGCCCAGGGACCACTGCGCCGGATTGGTCACTCTCCCAGAAGAGGCTCATCACCAAGAgacactgacctctgacctccaacTGGTCACCGTGGGAACACTGGCCGGCAACGCCGTCCTTCTTCTGGTGATTGGAGGAGCCTGGCTGGGGCGAAGTTTGAGGCGGAAGCTGAAAAGGAGGAAGTCAGCAGTGCATGTGCGTCACATGTACTCCACGCGGCGACCATTCCGCAGCTCCATGGCAACAACGGCGGCGGTGTCAACAGACTTCACAAGCTTCCAGAGCAGCCGGCCACCACGGCTTGGAACCCTGGAGGAAGGGGGCGACCTTATAGAGTTCCCCTGCGACCGTTTCCTTGACATCAGCCCCACCCGTAGAGACAACAGTGACATGCAGAGGTTCTCAGATTAATAAACACCATAGAACTGGAACTTGAAAACATGTTTGCGCTGTGACCCACTTAAGCGctagaatatatatttttaattgtgaGCATTAGATAATCCATATTTAGAACCTGAGAACACCAAGATGCCATCACCAGGAAGGAACATCCTCAGGAGAATGTGTAAGATgctgcagagacagagacagaagtgGACTGGTATTTAACCGGCACTCTGGAGCACTTCATGACCATAGCAGGACCACAGCCAGGGTTGAGTTATGACCATAGAACCACAAGGTTATATTCATGACCACATAACCACAGTAAGGTTGTGTTCAGGCAATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTTTGTTCATGGGTTATGACCATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTTTGTTCATGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTTTAGTTCTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTTTGGTTATGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGTTTTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTATAGTTTTGTTCATGGGTTATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGTTTTGTTCATGGGTAATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGCTCTGTTCAGGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTCTGTTCAGGGGTTATGACCACAGTTATAGTTCTGTTCATGGGTTATGACAATATGACCACAGTTATAGTTCTGTTCATGGGTTATGACCATATGACCACAGTTCTGTTCAGGGGTTATGACCACAGTTATAGTTTTGTTCATGGGTTATGACCATAGGACCACAGTTATAGTTCTGTTCATGGGTTATGGCCATGTGACCACAGTTATAGATGTGTTATGACCTAAAGTTGTCTTTTTATGGGTGATCAAATAGCTGAGCTCATCAGGGCTGATTCAGACACTACAGGATGTCAATCCCACAGACTTCCTCTAAGCCTCATGCATTTCCTGTTCcattgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaattaccTGATTTCATCTGGTGCTAATATTAGACGAATAGTCATTAAATTGTGTATAAAATGTCATTTGTAACATGCTTGAAAATGCAAGAAAAGATGGCTGCTGGTTGGCAGAAATAATTATTTGGTTTTATGTTTTTATACTTTTATACTCAACTATGTATTGTGCTGGTGCTAAGTAACAAGTAAGTAACCATGCATTTCCTGTTGGACGTAATGGTCCATTTGTCTGTATGAAAAGAAAGACCGATGCCTTTGCAAATAATGGTGTAAGTCCTTTGTTCATATGGCCccaatacaaataaagaaaccgATATTATAGTTTTGCTATTTTTACAGAAGGGCAGTAAGTTTAACGTTTGTAGTAATACTGCATATTCATTCATTAGAAAACATGTTGCGTGTGTAATGTATGCCTGCgtttgtgcaagtgtgtgtgggtgtgtttcatCATGTACttaaagtgtgtgtgcgtgtgtttcaaGACAGAAAGTCTGGCAATAGTTAGGTGTTTTTTTGGGTAGACCGGGTGGAGTACCTCCAACACTCAGGCCTGATCAGCTCTACACTCCAAGCCTGTCAACAGTGTGTTACCATAACAacagcagacacagacagacatatagaccaGGAAACACGGTCTGAGATATGAAACAGAAACAGCATAATCCACTTCAATATCCTAGTTGTTTAAGACTGATATGTTACTTAAGTTTTTGTTAAACTATAGTGGATTGGGCCTGTCCCCTACTGATAGTAAATAAAAGTCATCACTATTGACTTTGACTAGTTCTTGGCCCTCTCACATCCATTTTCTTTCACTCAACCTGCTAAAGCTAAATTACAGACGGGTAAATAAATCTGTGATCGCTGACCTTTGACTCATTCAATCAGGGTGCCTCAAACTGTCTTCAGTTCCAGAAGATATCGCTAGGGGGCAGACTATAACCATTCGTCTGACAGGCCTATTAGATCAAATGACATTTTCTCCTGATGGAGGCAACCGAACTTGAGTAAAAATCACAATAAGATACCAGAGAATAAGTGCTTTTATTTTCGTATTAGGTTTATAGCGATTGTCAATATctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792230 lncRNA downstream 24504 57392943 ~ 57395443 (-) True G1566553
TU1792224 lncRNA downstream 32306 57387406 ~ 57387641 (-) True G1566547
TU1792223 lncRNA downstream 32904 57386800 ~ 57387043 (-) True G1566546
TU1792216 lncRNA downstream 42427 57377310 ~ 57377520 (-) True G1566539
TU1791471 lncRNA downstream 150308 57269338 ~ 57269639 (-) True G1565893
TU1792249 lncRNA upstream 13675 57439678 ~ 57441583 (-) True G1566568
TU1792262 lncRNA upstream 24923 57450926 ~ 57451532 (-) True G1566579
TU1792312 lncRNA upstream 92137 57518140 ~ 57518694 (-) True G1566620
TU1792351 lncRNA upstream 158080 57584083 ~ 57584406 (-) True G1566645
TU1792367 lncRNA upstream 204732 57630735 ~ 57631601 (-) True G1566660
XM_021572551.2 mRNA downstream 46155 57336342 ~ 57373792 (-) True LOC110496580
XR_005037334.1 mRNA downstream 135557 57279066 ~ 57284390 (-) True LOC110496951
XM_021572548.2 mRNA downstream 271668 57146149 ~ 57148279 (-) True LOC110496578
XM_021572547.2 mRNA downstream 285152 57131465 ~ 57134795 (-) True LOC110496576
XM_021572546.2 mRNA downstream 289716 57124127 ~ 57130231 (-) True LOC110496574
XM_036953335.1 mRNA upstream 70636 57496639 ~ 57525253 (-) False LOC110496865
XM_036953336.1 mRNA upstream 70636 57496639 ~ 57525257 (-) False LOC110496865
XM_036953339.1 mRNA upstream 70636 57496639 ~ 57567781 (-) False LOC110496865
XM_036953342.1 mRNA upstream 70636 57496639 ~ 57567781 (-) False LOC110496865
XM_036953337.1 mRNA upstream 70636 57496639 ~ 57567804 (-) False LOC110496865
TU1790882 other downstream 682600 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 931658 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2754304 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2767097 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 3524998 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 601508 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 649620 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 741381 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 984496 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 1443360 58869363 ~ 58870007 (-) True G1567875

Expression Profile