RNA id: XM_036953336.1


Basic Information

Item Value
RNA id XM_036953336.1
length 3587
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110496865
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57496639 ~ 57567805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCATTGTGTAGTAGTTGGAAGTTGAAGGGCAGAGCAGCTAGCTTTAGACCAACTGTCCCTCAGTGGAGGTGGTGGGGGTAATCTTTCGGTTAGGTAAGCATTGCTGTGGTCGAGGAGTGGTCATGGTTCTGGCTATGGAGGACGCCTGTCCCAACGTGTTGGAGATAGAGGTGGAGCCCCCTCCGGATGCAGGCGGGACGGGAGAGGCAGGCGGGACAGGAGAGGCAGGCGGGACGGGAGAGGGGGTGGTTGCGTCCTGGGAGGGGGCGGCTGCTAAGCCCACAGAGGGGGCCAAGACATCCGGAGCGATGCAGCAGGTGTTGGATAACCTGGGGGAGCTGCCCACCTCCACGGGGGCCAAAGACATCGACCTCATCTTCCTCAGAGGAATCATGGAGAGTCCCATTGCCCACGAGCGATTGGAGGACTTGAGGCTGGAGGCGGTGCAGGACAACAATATAGAGCTGGTCACAGACATCTTGGGTGACATCACCGCCCTCAGCGTCCGTGATGACAGCGCAGCGGAACTCTCCCGAATCCTCCAGGAGCCCCACTTCCAGtcgcTCCTTGAGGCCCACGACATGGTAGCCTCTAAGTGCTATGAGGCCGTGCCCCCAGCGGAGCTGTTTAATGAGGAGCTGGGGAACAGTTCTCTGATGCAGGCCGATGCTGTACGCATGATCGGCATCCGCAAGAAGGCTGGAGAACCACTGggAGTGACGTTcagagtggagaaggaggagcTGGTCATCGCTAGGATCCTCCATGGAGGAATGATTGACAGGCAGGGTCTGCTGCACGTGGGTGACATCATAAAGGAAGTGAATGGGCGGGACGTAGGGAACAACCCCACTGAGCTGCAGGAGATGCTGAAGGACTGCAGCGGAGGAATCACTCTGAAGATACTGCCTAGTTATAGAGATGCACCCGCCccaccacagGTGTACGTGCAACCCCACTTTGACTACGATCCAGCAAATGACCATCTGATCCCCTGCCGAGAGGCGGGGATTGGCTTCAAGAGGGGGGACCTCCTTCAGATCGTCAACAGGGAGGACCCCAACTGGTGGCAGGCGTGTCATGTGGTTGGTGGAGCCACTGGACTGATCCCCAGTCAGTtcctggaggagaagaggaaagccTTCGTCCCAAGAGATTTTGATGGCTCAGGGATCCTGTGCGGTACGATAACtggaaagaagaagaaaaagatgaTGTACTTAACAGCCAGGAATGCAGAGTTTGACAGGCACGAGCTGCAAATCTATGAGGAGGTGGCCAAGATGCCCCCATTCCAGAGGAAGACTCTAGTTCTGATTGGAGCCCAGGGGGTGGGCCGACGCAGCCTCAAGAACCGACTGGTGGTCCTTAACCCAACATGCTTCGGAACCACCATCCCCTTCACCTCCCGGCGTCCCCGTGACGATGAGCTGGACGGTAAGTCCTACCGGTTTGTGACGCGGACGGAGATGGAGGCGGACGTGAAGGCCGGCGGCTACCTAGAGCACGGCGAGTACGACGGGAACCTCTACGGAACCAAGATGGACTCCATCCACGAGGTGGTGGACACGGGGCGCACCTGCATCCTGGACGTCAacccacagGCTCTGAAGGTACTAAAGACTGCAGAGTTCATGCCGTATGTGGTGTTCATCGCAGCACCAGAGTTTGAGACGCTCAAGGCCATGCACAAAGCTACGGTGGACGCCGGAATCACCACCAAACAACTCACGgATGTGGATTTGAGGAAGACTGTTGATGAGAGTGCTCGTATCCAGAGGACCTACAACCACTACTTTGACCTCGCCATCACCAACGACAACCTGGACCGCGCCTTCCAAACGCTACAGGCTGCCGTCGACAAACTCTGCTCCGAACCACAGTGGGTCCCCGTCAACTGGGTCTACTGAACCCCAACCGGACACTGACCGGTCAACTTGACCGTGTATGTGTTCGACCacagagacaggagaaaggaaaggagaaagggTGTTCGTCATGTGAGGGACTTTGACGGGGAAAACCCAAACCAACCGCCTcgtccttctctcccttcctcctgcaCACAATGCACATTTTTTCTACTCGAAACTCAAAGGCAAATAGTTcttatttattttaatatttgtaACTTTTTACGAAATATCTTTCTATTCATACCAACGTGAAATTCAGaaacatgaaaaaaataaaaaggccAAACATCACGGCCatatttatttgttgttgttatttttgtttgttttttgtagtTGTGCCTCTGAGAACtaatgatgtttgtttttttctccgAGGACTGCTTTGAAAGAGTTTTTATTATTGTTATATCAACACAGTTCAAGAACGAAGTTCAAGAACGACACTATGGAATATTCCAGAACTATGAGCAGTGTTGCCAAGGAAACCTGTTTACAGCGCTCGTTATTGCCATGACAACTACCGTGTCTCAGTCCAAATCCTGTGAAGCCCACCCTTGTGATTGTCGTAGGACCTCCCACCCCACTCCAAAGAAAATCCCCTACAGTGccctgtagtatgtactgtagttggcTACCCCTTGATTGGTTTGTGTTTATCTCTTTAGAATTATGACTTAAGAAAAAATGGACTTATTGTCTGAATATCTAACCCTCACACATCCCACAAAGAGAATGAAGGGAAAAAGCTTTACACTTTACATTGTGGTATAGAATATCAGGATCAAAACACtgtgtctgtttcattcatgtcTTTCTTTGACTTGTCTGTACTTTTATTTTAGTACCGTAGGATTCACTGTCTTTCGTTGCTACGGTGATCTTTTTAGCTAAGTGACATTTTTGTCTCGCATGATCCTTTGCTTTGAGTTGTCGTTTTCGAATATTGAACAAATACTACATCCTGTTTTGAAGcgttgtgtctgtgttgtgtcgACAGCATGACCATCAGAATACCACTCACCATCTACCCTAATCTGTATGTAAGGTGCTTATTGTTGTTTTTTAATCTGTTGCTATCCCATGGTCCTCTCCTCCAGTATCACATCTCCAAAACCCTCCTGCACTGTAACCTAAATACTACATTCTGTTTCCTGTGGTCACTCTGAAAGATTTCCCAACTCGTGACCAATAACAGACATCTCTAATAGCAATACATTGTTACAATAAATTAACTGAAATTCAGCTGGAAAGTTGTCCTTTTTTGTTTTGGGTAATGGTTATGTTTAGTTTATTTAATGCAGTAATATTTAAAGCCATTCCGAGACAATGGATGGttcataaatatacagtatattttattAAAAACACAGAATGCATAGTTTTGTGGCAGCATTGCAACTATGTAGAATTGTGAAATTGCAGAATGCACCATATTGATATTCTCCTGAAAAGCATGATAATCTAACAAATACCAATATGCTATGACTTGATGTTTTACAGAGGTAATACatctacatacatacacattctGACTAAGCCATACCACTAGATCTAACAGTACCAGCAACTGGGATGAGTCCATAATCTCAAAACGAGTTATAGAATATCTTGTCTGTAGATAGTGAGTGGTATGTTCATAAactgaataaacattttgtttatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792262 lncRNA downstream 45107 57450926 ~ 57451532 (-) True G1566579
TU1792249 lncRNA downstream 55056 57439678 ~ 57441583 (-) True G1566568
TU1792245 lncRNA downstream 69129 57425634 ~ 57427510 (-) True LOC110496581
TU1792187 lncRNA downstream 76405 57418906 ~ 57420234 (-) False LOC110496581
TU1792230 lncRNA downstream 101196 57392943 ~ 57395443 (-) True G1566553
TU1792351 lncRNA upstream 58826 57584083 ~ 57584406 (-) True G1566645
TU1792367 lncRNA upstream 105478 57630735 ~ 57631601 (-) True G1566660
TU1792378 lncRNA upstream 106520 57631777 ~ 57633115 (-) False G1566667
TU1792380 lncRNA upstream 106520 57631777 ~ 57633115 (-) False G1566667
TU1792381 lncRNA upstream 106520 57631777 ~ 57633115 (-) True G1566667
XM_021572552.2 mRNA downstream 70636 57419947 ~ 57426003 (-) False LOC110496581
XM_021572551.2 mRNA downstream 122847 57336342 ~ 57373792 (-) True LOC110496580
XR_005037334.1 mRNA downstream 212249 57279066 ~ 57284390 (-) True LOC110496951
XM_021572548.2 mRNA downstream 348360 57146149 ~ 57148279 (-) True LOC110496578
XM_021572547.2 mRNA downstream 361844 57131465 ~ 57134795 (-) True LOC110496576
XM_021572557.2 mRNA upstream 52156 57577413 ~ 57580463 (-) True LOC110496583
XM_021572559.2 mRNA upstream 74031 57599288 ~ 57628309 (-) True fam221a
XR_005037516.1 mRNA upstream 127517 57652774 ~ 57656815 (-) True LOC118941192
XM_021572566.2 mRNA upstream 173857 57699114 ~ 57715622 (-) False LOC110496588
XM_021572564.2 mRNA upstream 173857 57699114 ~ 57715653 (-) False LOC110496588
TU1790882 other downstream 759292 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1008350 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2830996 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2843789 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 3601690 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 502254 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 550366 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 642127 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 885242 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 1344106 58869363 ~ 58870007 (-) True G1567875

Expression Profile