RNA id: XM_021572560.2


Basic Information

Item Value
RNA id XM_021572560.2
length 1914
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110496585
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57628437 ~ 57632714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTGACGCAGTACACACAAGACCGCTATTCGTCGCTCAGGAAACGGACTGTGCTCGAGACCGATTGCATTATGAACAAATTTCGCCTAGGCATGCGAACAATTATGCATTGCTACTCAATTTAAGGACAGGCCATTTATTTCAGTTGTAATGCTTAATATTATTGAGATATTAGATTCCGTGTCAgcagtgagctagctagctatctatcaAGCATCTTCTGACAGTGACATTTGTCTCTGCCTTGTGCTGTGTTCTCCTTCTTGGAATGGGATCGCAGACTGATGTTCCGAACAGCTTAGTGATTCAAACGAACAAATCCAGatCCTCCGTCTCTGAGTGACGCAGCTATGTATGTGTTTGGGCCCCATGGTTGACTGCCaggtgtgtgtagtgtttttaTTCCCCGTGCTCCTCCATAGCCAACCCCAGCCCAATATCCCCCAGCCCCATATCCCCCAGTCCAAAGCCCTAGCCCCATATCCCCCAGTCCAAAACCCTAGCCCCATATCCCCCAGTCCAAAACCCTTGCCCCATATCCCCCAGTCCAAAACCCCAGCCCCATATCCCCCAGTCCTAGCCCCAGCCCGCTTAACCCTGTATCAGAGTATTTTGCTTGAACTATCCCCTGTCTACGTCCTAGCCCCAGCTCCAAACCCGTGCCCGTTTTCCCCTAGAtccttctccttcctttcctcacACCAGCCCCCTTGCCCATTCAATTCAAATCACCCACTTCCAGACCTAGCACCAGCCCCACTCCCAACCCTGTTCCCCCAGCCGCACACTCTATCCGCCAGCCCAACACTCTatcccctacccctctctcctggcCCACCACCATCTATCTCCAGCCCACGTCCAGCCTCCATACCATGCTGGGGAGAAACATGTCCCAGAAGCTGAGTGGGCTGCTGATAATCTTGGGGCTGGCGTGGGGGCTCATGTTGCTGCGCTACACCGTGCAGCAGCCGCGCCACAAGAGCAGTGGCGAGCTACGCCAACAGATCCTGGAGCTGAGCCGGCGATATGTCAAGGTGCTCAACGAGGAGAACCAGAACACACTGGGAGGACCGCAGGGCCCCTCCATGGCCGGTTATGctgatctGAAGAGGACCATAGCAGTGTTGCTGGACGACATCCTGACGCGCCTGGTCAAGCTGGAGGGGAAGATGGAGCTGGTCGCCAACACTTCAGCCACTAACTCCTCCCATCCTGCAGCAGGCTCCCTGGCCTCAGCTCCAGTTGCCTTACACAAGCAGGACACGCCAGGCAACCACCGCCTGGAAACACCTCGCCTCCCTCCACAAACACCCAACAGACCTCGCCCAGGGATCAGTGATTAGCTCATGGGAGGAAGAAAAGAGTGAGGATGTATTCTAGATCATTTAAAACTAACCTAACCCTGAGAAAGGACTGACTGCCTGTACCTTTCCAATAACTACTTGGCTGATTGACATTTTTTTACATAGACATTTGAGCATCTTTTTTAATACTCTCAGTCATGGACTCTTAGGCATACATTTTAGATTCCCTAATTGTTTTTTCATGAAAGGGTCTACAAACTGCGGCTGTCTTTGAGGATGTCTATGGGCAACAACAAAGCATCAACAACAGTAGAGGAAATGAACAAATGTTTGTACTCTGTGGAGTCTTCAAGGAAGCTGATGATGAATATGAATGGCACAGCCACCCCGATATTTTATCCCTTGGACAGACCGACTACGAATTTGCTGTACTGCTTCTTTAAATCTCATCCATATCAGAAGTTGCTCAACTAAACAATGCACTCATGGTAGTTTTGGAAATTATGTATTTGAGTTTGCAGAAGCTCCTGGTGTTAATATGTAGATTTGAAGAGTCCCTTTTTagctgttttatatatatatatgtgtatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791622 lncRNA upstream 107570 57520038 ~ 57520867 (+) True G1566024
TU1791525 lncRNA upstream 187197 57439717 ~ 57441240 (+) True G1565938
TU1791572 lncRNA upstream 198652 57429492 ~ 57429785 (+) True G1565977
TU1791553 lncRNA upstream 241735 57379653 ~ 57386702 (+) True G1565958
TU1791487 lncRNA upstream 302454 57325583 ~ 57325983 (+) True G1565906
TU1791718 lncRNA downstream 22559 57655273 ~ 57655494 (+) True G1566109
TU1791768 lncRNA downstream 135672 57768386 ~ 57769136 (+) True G1566158
TU1791806 lncRNA downstream 188896 57821610 ~ 57885127 (+) True G1566194
TU1791837 lncRNA downstream 214115 57846829 ~ 57849957 (+) True G1566217
TU1791892 lncRNA downstream 340690 57973404 ~ 57976373 (+) True G1566267
XM_036953333.1 mRNA upstream 133219 57480504 ~ 57495218 (+) False LOC118941191
XM_036953334.1 mRNA upstream 133219 57480504 ~ 57495218 (+) True LOC118941191
XM_021572556.2 mRNA upstream 152038 57441377 ~ 57476399 (+) False LOC110496582
XM_021572562.2 mRNA downstream 9971 57642685 ~ 57648819 (+) True tra2a
XM_036953345.1 mRNA downstream 24351 57657065 ~ 57694865 (+) False LOC110496587
XM_036953343.1 mRNA downstream 26435 57659149 ~ 57694865 (+) False LOC110496587
XM_036953344.1 mRNA downstream 26440 57659154 ~ 57694865 (+) True LOC110496587
XM_021572568.2 mRNA downstream 97230 57729944 ~ 57742687 (+) True LOC110496589
TU1791304 other upstream 516474 57109333 ~ 57111963 (+) False LOC110496571
TU1791310 other upstream 516597 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other upstream 516597 57109333 ~ 57111840 (+) False LOC110496571
TU1791219 other upstream 596474 57031621 ~ 57031963 (+) True G1565672
TU1790119 other upstream 1576644 56050588 ~ 56051793 (+) True G1564638
TU1791820 other downstream 218507 57851221 ~ 57863046 (+) True LOC110496591
TU1791842 other downstream 283901 57916615 ~ 57920646 (+) True LOC110496592
TU1791846 other downstream 308383 57941097 ~ 57946763 (+) True G1566224
TU1792104 other downstream 731542 58364256 ~ 58377006 (+) True G1566445
TU1793356 other downstream 1238185 58870899 ~ 58873690 (+) True LOC110496618

Expression Profile