RNA id: XR_005037516.1


Basic Information

Item Value
RNA id XR_005037516.1
length 1344
RNA type mRNA
GC content 0.37
exon number 3
gene id LOC118941192
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57652774 ~ 57656815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTATATGAATCAGCGCGCGAAGAAAACTGTTTTTTCACTGTTAATGGAAAAAGGTAATAGCACGTTCCTAATCTAACGATGCGGCTAGATACATGTTAGGCTACTCCACAAGAACAGTCCCATTATTTGTGTTGGTCAATGAGAAAGTTGGAGATGGAAATTATCTTATATAAAAGAAAAAGGTAAAAGAGGTAAATTAGATGGTTTCAAACACCTCTATTAGGCCTACATGTTCGTCTGCTTCGCAAATTCACCTGTAATGTATTACATGGTAAAAATAAGGATGTCATCTTTTCCTCAACATAAAAGTATACTTGCCTTTCAACAAACAATAAACAACCGTGTAATTAATTCGTTTAGTTCAATAGTCTAGCTTATTCGTTCAGTAAACCCGCACAATTTAGTCGATTTGTTCAATGAGCCCAACTCTAATTCTGTTTGTTGTGAAATAACACAATGTTTATTTAAGACACTTTTCTGGAAATGTGAAATATACTgtgttcatatatatatatatatatatagataaaaTATTGGACTATCAGTGTGACTTAGATTCTATACTTTGTTTACATCCAACCAATGTACGCATTCCTTCTCTTCGCTACCATTCCAGGCTTGTACAATGAGCTCAGAAACTGCAAAGTTGTGAATATATCCGAGAAGAATGTACAGAAAAAGACCCCGCCCACATTCTTTGAGGAAAACTTTATTCCTTAGGGCTAAACAGGCTTAAATAAAGAAAGATTCATATACCAAAGACTGCGTCTTGCATGGAATGATTTGAGATTTTTAAGAATGGAAAGCACACGGGGACCATCGTCTCATCCAGTGAAAGCCTTACCATCCTGCAGCAGGTGGTGGTGCTGATAAAGGCGGTCAAAGAAAGGTGAAAGTGGTTTTATGTCATGTGTTTACCCTCTTTCAAACATGTGCATCTCTACTGTAATTCAACGATTTATTTTCAAAGATAGCCTCAAAATATTACCTCATTCCCTGTAGCCATTCCCCTTGCAAGGGGAAGATGAAACTCTATTGGTCAACATAAACTAGTAGGGCTGGTCAGTTTATTAATATTTTCCCTTGTAACTGTATCTTGGATTAAAAATAATTTGCTCTTAAAACAAACTATAGCATTATTTTCGAATGTTTATGTTCCTGACCCTATAGTAACCACAGTGTCGTCAGTGGTGTGATGGTAGCCATTACCCACTTCAGTGGGCTCCGGTATCATTAGTTTCAAGGTCTCCCGATACTCCAGATAAACGTTGTGGTTTCCACCCCACCCCTCTATTACGGCTTCTGATCAGTCAACTAGCCTGCTGAATCACAAATGCTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792404 lncRNA downstream 986 57651073 ~ 57651788 (-) True G1566688
TU1792401 lncRNA downstream 3957 57647034 ~ 57648817 (-) True G1566685
TU1792398 lncRNA downstream 8746 57642739 ~ 57644028 (-) True G1566683
TU1792378 lncRNA downstream 19659 57631777 ~ 57633115 (-) False G1566667
TU1792380 lncRNA downstream 19659 57631777 ~ 57633115 (-) False G1566667
TU1792436 lncRNA upstream 35267 57692082 ~ 57692457 (-) True G1566716
TU1792434 lncRNA upstream 36096 57692911 ~ 57760375 (-) True G1566714
TU1792472 lncRNA upstream 77308 57734123 ~ 57734391 (-) True G1566748
TU1792435 lncRNA upstream 99567 57756382 ~ 57761979 (-) True G1566715
TU1792433 lncRNA upstream 107687 57764502 ~ 57765171 (-) True G1566713
XM_021572559.2 mRNA downstream 24465 57599288 ~ 57628309 (-) True fam221a
XM_021572557.2 mRNA downstream 72311 57577413 ~ 57580463 (-) True LOC110496583
XM_036953340.1 mRNA downstream 84969 57496639 ~ 57567805 (-) True LOC110496865
XM_036953337.1 mRNA downstream 84970 57496639 ~ 57567804 (-) False LOC110496865
XM_021572566.2 mRNA upstream 42299 57699114 ~ 57715622 (-) False LOC110496588
XM_021572564.2 mRNA upstream 42299 57699114 ~ 57715653 (-) False LOC110496588
XM_021572565.2 mRNA upstream 42299 57699114 ~ 57715653 (-) True LOC110496588
XM_036953351.1 mRNA upstream 109685 57766500 ~ 57800099 (-) False rftn1a
XM_021572569.2 mRNA upstream 109685 57766500 ~ 57812891 (-) True rftn1a
TU1790882 other downstream 915427 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1164485 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 2987131 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 2999924 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 3757825 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 370696 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 418808 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 510569 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 753684 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 1212548 58869363 ~ 58870007 (-) True G1567875

Expression Profile