RNA id: XM_036953378.1


Basic Information

Item Value
RNA id XM_036953378.1
length 3534
RNA type mRNA
GC content 0.45
exon number 8
gene id oxnad1
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57744249 ~ 57760416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGCTACACCTGGTCGGTTGGGTGGAATATGTTTGATGTTATTTCATGTGCTTTTTCTTCTCCAGCCAGGAACGTTTGGAATGGTCGGTCACCCATTTCCTTCCTTTCAAGGTATGTTGGTTCTTTATTTATTTGGGTGGAGTTGAAAGTGTTACGGTTGTgtaaattcgaatctggtatcaggataaatataacaATGAGTTAATGTAAAACACAGAATCCAACAAAAGTAACCCAATTAACGTAGGACTGTTTAGTCCTCTTGGTTCTGTTACATTGCTTTTTCCCAGATGTGTTATTAATCTTGTAGACTTGAGTCCACACCTTCCTTTTCCTTTGAATTATGTGGAAAGACCAGTTGGGATAAGGAGACAATACCATTTctcatccctggattgaggtacAATTTCCAAACCATATCTTGCGCTGGCTCGTTAATATCTGAATCTAAACAGGAAGCCTGTCCGACCTCAGTGCAGCTGTACGGAATCGTATGGTCGGAATCTATTCTCGCTAAGAACAAAGTTGAACGTGGCCTGCGCAGTCTGCGCAAATATGAACCCGCGAAAGAGCAGTCCGTCAATCCCTTCCGGGGTCAACAAAGCTTTCACAGGAAGGTTATCTAACTAACTTGTACAATGAAGAAGATCACATGAAACATTCTCATCACATTGGTTCCCTCTATAAAGTTAAGGTGAAGTGACATCCTATCGCAATGAGCGTCCCATGTCTACTGTCCAGGGCTGCTCGAAGCTTCACATTGCTGGGGGCGTCCGGTGTGCTGCTACACCGGTTCCGTGTATTGTGCCCTTGTTCGATCACAAGGAAAATGTCGTCCAGAAGACAAATGGACCATCTAGAGAGGACAGCCAGCAACTACAGACAAGATGGTGTATATCCGGCGCAGGTATGTGGCATCATGGACGAGTCTGAGACAGTGAAACGCCTCCGGCTAGCTGTCCATCCAGACTTCACTTTCAGAGCTGGCCAGTGggtGGACTTCTTCATCCCTGGTATGGAGAAGGTAGGAGGATTCTCTGTGTGTTCCAGTCCAGGTCTGCTGCAGAAAGAGGGTGTCATCGAGCTGGCTGTCAAATACACACAACATCCCCCTGCACACTGGATACACACCAAGtgcACCATGGACTCTCATGTAGCGATGCGTGTGGGTGGTAACTTTTTCTTTGACCCCCTGCCCTCTGACCCCTCTGTCGACCTGTTGTTGGTGGCTGGGGGCGTGGGCATTAACCCTCTATACTCCATCCTGCTCCATGCCGCTGACCTGTTACGACAGAACCCCACTAACGCAGGGAGGGGCTACCACATAGGCTCCACCCACCTCTGCTACAGTGCCAAGAACACACAGGAGCTGCtcttcaagAAAAGCATCATAAATGTGTGTAAGGAATTCCCAGAGAAATTCTCCTGTGACTTCCACATCACCGCACAGACCGCAGACATCGACCAGGAACTCCAACCGTACATGAACCGTGGGAGGCTGTCAGAGGGGGGGTTGCGTTGCCACGTCGACCCTAACACCACTCTGTGTTACCTGTGTGGCCCTCCACCCATGATAGAGAGCGTGGTCCAGACCCTACTCGGCCTAGGCCTACCCCAGGAAAGGATACTGTTTGAGAAGTGGTGGTAGTGTGTACTAAAGACAgacctcttcatcatcatctcacccctgctctctcctccagtGCCTAGGAGATCAGACCAAGCACCTGCCCACGTTACCATGGCAACCTCTCAAGGAGTATTGGACCATATGTCTGGAGCTGCACacatcattttatttattttacttcacCTGAACATACTAGGGCTGTGAAGGTCAGCCTGTGATTGTCATGTATAactgaccgttaattaacaaacacatttagcatctcctgtctTCCACTCATAGCCTACAAGCCCCTGATGCAGACCGTTGGATcatctacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaaacattaaAATAGCATCGAATTGATCataaatgcagtgtagacattaatgttgtaaatgactgcagattattaatggaatatctacataggcgtatagaggcccattatcagcaaccatcactcctgtgatccaatggcacgttgtgttagctaatccaagattaTCAATTTAAAAGGTGATATGAACATAAGTTGAACAAGGCTCATTGCACTGAGCCTGACTGATTTTGACCTCTGACCCGTGTGAAGTGCAgtataaaatgtatataaaagTTTCTTGATGGTGCACATTGCCCAGTGGAGAAACGTTCAACTGTTTTCTGATTATGAAAATAAGTCATTTTATTCAGTGGATATAGTTTGAGGAAATAATGTGTACGTGCAATTCTGTACAGTATAATTATCTGATACATATTTTTTCTTGcagtagaaatgtttttcaaACAAGACCGAGCCTAGTCTGGCTAAACGCCCGCTCTCAAAGTCTTTCTGACTGTAGTCACGTGGGTCGCGTCCGCCAGGCTAGACCGAACCACACAGCAGAacccctgtttatacctggtgctaacatgaTCCCTGTGTCCTGATCttttccacattctgattgtaccCACATTTTTTGAAGTTTAAATCATTCTAATAACTGATTGTGATTAGATAGTTGGATGATTTGATGGGTTAGGTGACCGCTCTGTGGATGGAGTCAAATAAAAGAAACCCTTtcagagaggtggatggagggcAGTAAACACGGGCTGTGAACAGCAAGGTTGTCAATTTGAATCCCAATGAGACTTGTTTTCCAACCCTACACAACGTAACTAATCACATTTTAGTGTCTTACTGAAGAACTTCAAATATGTGAAAAACAAGTGTGGTGCTCTCCCCATACTGGCGCAATGGACTAGGCACTGGGGATAGGGACCAGAAGGTCCCAGGTTCTGATCTTTGATGACCCTTTTCAAAAAGGTATATTTATAGCCCTGGTTACACCTTGCATTAAAATGTGGTTTCGTTATCTGATCAAGGTGGTTCAATGAGAATGTAGACACGCTCAGCACACATTGTTAGCACCAGATATAAAGGGGCTAGAGAGAAAATCACACCATCGAGTGTATTTAtagaacgtttttttttaaactatgcaGACCTTAACACATCAATCACACACATCCTGGAAAGTGTCccctcatcccatctctctcacacatcctGGAAAgtgtcctctcatcctctcacacATCCTGGCAAGTGTCCCgtcatcccatctctctcttcctctcacttaTACACACACCACGACTTCTTCCAATCATCACACACCCATCCAGGCCTGAAAtcgcacacacacctctcacaaatGAGTTTGCATATACAGAGGCTGAGGGGGATCTGTCATGGTGCACAGTAATATAACCTCCTGGTGGTCCATGTCCGCTGAAATAGTTTTGTTTTGCTCCTCAGATGTGAGAAGACTGAGGGGTGTATACAGAATTAAgagttgaaataaaagaaaaCGAAGTCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1791718 lncRNA upstream 88759 57655273 ~ 57655494 (+) True G1566109
TU1791622 lncRNA upstream 223386 57520038 ~ 57520867 (+) True G1566024
TU1791525 lncRNA upstream 303013 57439717 ~ 57441240 (+) True G1565938
TU1791572 lncRNA upstream 314468 57429492 ~ 57429785 (+) True G1565977
TU1791553 lncRNA upstream 357551 57379653 ~ 57386702 (+) True G1565958
TU1791768 lncRNA downstream 7970 57768386 ~ 57769136 (+) True G1566158
TU1791806 lncRNA downstream 61194 57821610 ~ 57885127 (+) True G1566194
TU1791837 lncRNA downstream 86413 57846829 ~ 57849957 (+) True G1566217
TU1791892 lncRNA downstream 212988 57973404 ~ 57976373 (+) True G1566267
TU1791894 lncRNA downstream 221183 57981599 ~ 57981812 (+) True G1566269
XM_021572568.2 mRNA upstream 1566 57729944 ~ 57742687 (+) True LOC110496589
XM_036953345.1 mRNA upstream 49388 57657065 ~ 57694865 (+) False LOC110496587
XM_036953343.1 mRNA upstream 49388 57659149 ~ 57694865 (+) False LOC110496587
XM_036953344.1 mRNA upstream 49388 57659154 ~ 57694865 (+) True LOC110496587
XM_021572562.2 mRNA upstream 95434 57642685 ~ 57648819 (+) True tra2a
XM_021572572.2 mRNA downstream 90763 57851179 ~ 57870361 (+) False LOC110496591
XM_021572575.2 mRNA downstream 133438 57893854 ~ 57935297 (+) False LOC110496592
XM_021572574.2 mRNA downstream 133439 57893855 ~ 57935297 (+) False LOC110496592
XM_021572577.2 mRNA downstream 146470 57906886 ~ 57935297 (+) False LOC110496592
XM_036953387.1 mRNA downstream 305068 58065484 ~ 58140619 (+) True LOC110496868
TU1791304 other upstream 632290 57109333 ~ 57111963 (+) False LOC110496571
TU1791310 other upstream 632413 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other upstream 632413 57109333 ~ 57111840 (+) False LOC110496571
TU1791219 other upstream 712290 57031621 ~ 57031963 (+) True G1565672
TU1790119 other upstream 1692460 56050588 ~ 56051793 (+) True G1564638
TU1791820 other downstream 90805 57851221 ~ 57863046 (+) True LOC110496591
TU1791842 other downstream 156199 57916615 ~ 57920646 (+) True LOC110496592
TU1791846 other downstream 180681 57941097 ~ 57946763 (+) True G1566224
TU1792104 other downstream 603840 58364256 ~ 58377006 (+) True G1566445
TU1793356 other downstream 1110483 58870899 ~ 58873690 (+) True LOC110496618

Expression Profile