RNA id: NM_001246339.1


Basic Information

Item Value
RNA id NM_001246339.1
length 691
RNA type mRNA
GC content 0.48
exon number 15
gene id dazl
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57822733 ~ 57831166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGCGCGGCAGTGTGTTTAATTTATTCTGTTTTAACGGTTTTAGAAATGGATATtcagaaacagagagatggattTCAGACATCCCTAAATTTGAAGCTGTCAAATGGTTATATTTTACCTGAAGGTAGAATGACACCAAACACACTTTTTGTTGGAGGAATTGACATGAAGGTGGATGAGAATGAAATCCGGGACTTCTTTGCGAGATTTGGTGCGGTGAAGGAAGTGAAAATCATTACTTACCGTGGCGGCATCTGTAAAGGATATGGATTTGTTTACTTCAATGAAGATGTCGACATCCAAACCATCGTTGACCAACAGATCAGTTTTAAAGGGCGGAAACTGAAGCTGGGTCCAGCAATCATGAAGGAAAGGAGCTCACGTTCCATGCCGTCTCACGTGATTGGTCAGGTCCCCTGGATGAGCCCCTCCCAGTACATTTACTGCACCTGCTGCTCTCCTATGGGAGTGGGCGTGGCTCAGCCCCCACCTGTACTCAACGGGGGCAATCCCTACATCCAGCCTTACTCGTATAACGGCCTTCAAGGAGTCATGATGCCACAGATGCCCATGAGCTACTCACAAACCGCCTACGCGTACCAGTACGCCTCACACACTGGACCGGGGAGCAGAGGAACGGCTTGTCACCAGAATTTGTGGATGTGGAGCAGACTCTGCTGATCTGCTG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792433 lncRNA downstream 57562 57764502 ~ 57765171 (-) True G1566713
TU1792435 lncRNA downstream 60754 57756382 ~ 57761979 (-) True G1566715
TU1792434 lncRNA downstream 62358 57692911 ~ 57760375 (-) True G1566714
TU1792472 lncRNA downstream 88342 57734123 ~ 57734391 (-) True G1566748
TU1792436 lncRNA downstream 130276 57692082 ~ 57692457 (-) True G1566716
TU1792559 lncRNA upstream 30740 57861906 ~ 57863122 (-) True G1566828
TU1792571 lncRNA upstream 67795 57898961 ~ 57901421 (-) True G1566839
TU1792595 lncRNA upstream 99855 57931021 ~ 57931904 (-) True G1566857
TU1792535 lncRNA upstream 112491 57943657 ~ 57944600 (-) True G1566806
TU1792609 lncRNA upstream 142239 57973405 ~ 57976522 (-) True G1566871
XM_021572569.2 mRNA downstream 9842 57766500 ~ 57812891 (-) True rftn1a
XM_036953351.1 mRNA downstream 22634 57766500 ~ 57800099 (-) False rftn1a
XM_021572564.2 mRNA downstream 107080 57699114 ~ 57715653 (-) False LOC110496588
XM_021572565.2 mRNA downstream 107080 57699114 ~ 57715653 (-) True LOC110496588
XM_021572566.2 mRNA downstream 107111 57699114 ~ 57715622 (-) False LOC110496588
XM_021572952.2 mRNA upstream 7553 57838719 ~ 57848361 (-) True LOC110496952
XM_036953348.1 mRNA upstream 108447 57939613 ~ 57966150 (-) False LOC110496593
XM_036953349.1 mRNA upstream 108447 57939613 ~ 57966150 (-) True LOC110496593
XM_036953347.1 mRNA upstream 165761 57996927 ~ 58019631 (-) False LOC110496867
XM_021572582.2 mRNA upstream 382063 58213229 ~ 58223672 (-) False sgo1
TU1790882 other downstream 1085386 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1334444 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 3157090 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 3169883 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 3927784 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 196345 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 244457 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 336218 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 579333 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 1038197 58869363 ~ 58870007 (-) True G1567875

Expression Profile