RNA id: XM_036953347.1


Basic Information

Item Value
RNA id XM_036953347.1
length 5022
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110496867
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57996927 ~ 58019631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGACTGCATTGAATAGCATACAACTGAACTCACCGTGTATTGGTCGCTTCACCAGTTTTTCAACGGAATCCTTGTAGCATACCAGCTGGTCTGTAGCCTAATTCCGTGAACAGTCTCTGTCACTGTGGATTGCTTTGACTGATATTCCGGTTAGACCACCGATAGACTCGTTTTATTCCGTAGCTATTTGAGAAGGTCCGAAAGCGTGCAGCCAGCAGGGAACGACGGAATATGTTGCTACGTAGCTGATATGATATAGACACAATAGACCGACGActagtgtaaaagagagagatgaggtgatgtTCTGACTCACTGAGACAGCGTGGACATAAATCAAGACGATGAACTCTAGTATTTTACTACCTACGGCATATCGGAATCTCAACAGGAACCAGCAGCCAGCGGATGTCAGTGTATCACTCAGTCCCACATGTGATGGACCCCCAGCAGTGTGATGGAGGCCATGTGTCAGAGGGGTGTAACACTCCTGGTAATGGGGACCACCGGCCCCCTCCTGCCAAACTGGTCCGCCTGGAGTTGAACGGTGGGGGGGGGCTCTCAGGTCCACACCAGGGCAGGACGAGACAGGGGAGCCCAGGGGTCAGAACTTCGGCCCCCAAACTCACCACACCCGTACCACAACCCAAGAACTGGCATAAAAGAGGAAGCCTGCTGCCTGTGCTGTGTTTGGTGGAGCACAGAGAGAGCCCGGTCCCAGCAGTGgagcctgagaggagagaggagcatgcAGAGTTTGTACTGGTCAGGAGAGACCTGCTGTTTAACCAGCTGATAGAGATGGCTTTACTGGCCCTGGGCTACTCTCACAGCTCAGCAGCACAGGCCAaaggttcGATCCAGGTGGGTAGGTGGaaccctgtccctctgtcctgtGTGACTGATGCTCCTGATGCCACAGTGGCTGACATGCTACAGGACCTCTACCATGTGACCACCCTCAAGATCCAGCTCACCAGTTGTCCCATGTTGGAGGACCTCCCTCCAGAACAGTGGAGTCACTCCACAGTGAGAAACGCCCTGAAGGAGCTATTGAGAGACATGAACCAGAGCTCACTGGCCAAAGAGTGCCCTCTGTCCCAGAGTATGATCTCCTCCATTGTTAACAGCACCTACTATGCAAATGTGTCGGCCTCCAAGTGCCACGAGTTTGGCCATTGGTATAAGCACTTCATGAATACCAAAGGCATCATGGAGATTGACAGCTTCTCTGACCAATCCCAAACGAGCTCCACACACCCATCAACCAAACAATCATTCCCAGGCAGCACAGCCGAGCAGGTCTgctcctcacccctcccctttCCTCACGGGGGTGCCACCCACACTTCTGGGCGTAGTTGTCTGGCCCCAAGTCTCTGCCCCCCGGGGCTGGTGACcgcccccctcagcccccagctagTCAGCCCCCAACAGATAGTCATGGCCCAGTTCCTCAACCAGCAGTATGCAGTCAGCCATATGCTAGCCCAGCAAAGCCTGTCTGTATCTGTTTCCACCTCCCCCCAGCAGTTCCTCAACCACCCCCCTGTGGGGAGGCCTCCCCCCTCCCTGGCCCTAGCCAAGGGCCTCGACCCCCCGCCCCAGGGTGGACCACCAGGACCTGGGTCTGGGTCCCAGAGCCAGGTGTGTGGACCATCAGACATCTCATGTGAGATCTACCAGTGGGTGAGAGAGGAGCTGAAGAGAGCAGGCATCTCCCAGGCTGTGTTCGCCCGTGTGGCCTTCAACAGGACCcagGGCCTGCTGTCTGAGATCCTGCGTAAGGAGGAGGATCCTAAGAGTGCGTCTCAGTCTCTCCTGGTCAACCTGCGGTCCATGCAGAGTTTCCTACAGATACCGGAAGGTGACCGCGACCGTATCtaccaggaggagagagagaggagtctgaCCACGTCGACCATTATCAACCATTCACCCAACAACACTACCACACCACGCCACACACAGACCAGAAAGGAAGAGGGAGACTTTGTTAAGGCTGAAGATTGGCCCTCCCAGGTTTCCATTGTATTTCCTAaaGTGAGGCTGTCTCCAGTAGCAGTAGTAAACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGAGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTCTTCTAGACAGAGGGGTGAAGAGCGAGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAACGAGGGATGTGTTCTAGACAGAGGGGTGAAGAACGAGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTAAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACAGAGGGGTGAAGAACGTGGGATGTGTTCTAGACGTCAACAGTTCTATCTATGAGGAGATCCAACAGGAGATGAAGAGAGCCAAGGTTTCTCAGGCCATGTTTGCCAAGATGGCCGCGTCCAAGAGTCAGGGCTGGCTGTGTGAGCTGCTGCGCTGGAAGGAGGATCCGTCCCCGGAGAACCGAACCCTGTGGGAGAACCTGTGTATGATCCGGCGCTTCCTGAGTCTGGCCCAGATGGAACGAGATGCCATCTATGAACAGGAGAGCAACACTCTGCAACAACACTGTACAGACAGACTCACACAGCtagtcaacaacaacacactgCTCCAACGCCACTCCCCATTGcaacaacaacaccatcaacGAACACTGACCGCTCTGTCCCAGCTGCCCTTGCAGCCCCAGGCGGAGCCTCGCCTGCCGCCACGACAACCATCCACAGCATCACCGGCCGAGACTGAGGGGCGTAGGGGGCAACTGAGGACCTGGTGGGGAAGTAGTCAGGGTGATGGGAGGGAAGAGGATATTACTGGCAGGGGCAGTAGGGGTTGGGGCCAGGGCAGGGTTAGGGGTGTGTGTAACAATgacaaggaagggggagagggacggTGGGCGGGGGGCAGACAGACTAACGGCGAGGGCGATGGTGGGAGTGATGGCGAGGGGTTTCGGGTGTCCCGAGAGGCACAGGGGATCCTGCAGAGCTTCATCCAGGACGTTGGTCTGAACCCAGACGAGGAGGCTGTCCACACACTGTCAGCCCAGCTGGGCCTGCCCAAACACACCATCCTCAGCTTCTTCCACAGCCAGCACCACAGCTACACTCACCAGAACCATAGACAGCACTACAGTGAGATCCAACACAACCAACATCCGAGCCAGGACGACAACCACAGAGAGAATCACAACCAACACCACACGGACCAGGACCAGCTCTTCTATAATGGAGCAGGCCCAACCCAGCCTAAGAGAACTACAGGGGAGGAGTGGACCGTAGATCTCACTGGACAaatggggggggaggggaggatatgGAGCGGGAAGAGGAaatagaggggaagggggaggaggacgCCATTTTGAAAGAGTTGGATGTGAGCAGTCAGACTAACGCCGTCGCCACCCTAGAGGTGGAGCAACATGATTCTAACCAATCTGAGACTGCCCAACCACATGACTGATGAATAACATGAGTCCATCCACTAGTTGTCCCCTTTAACCCAATGAGAAGGCATCAATTTTATAGACTCATCTAGCTCTTCAGAAAATAATATTAGCCTTTTCTGAAGAATTTTAGTAATGAATGATGTGGTGTTATAGGTGTTTCCCTTATTTGTAATGAAACATTTCAATTAAAGACTAACTGTGAAAATAAATGAAATTATGTAGTTATACATGTATGCAGAGTtagtttaaaggcccagtgcagtcaaaaactagattttcctgtgttttggaTATATTTCctcactgaggttggaataaaaCAGTGACATTGTGAAAagtatgataatgccctttcagtgtaagagctgtttgaacatgtttgcctgttttggtggggtggagctttggcctgcctggtgacatcaccagacgCTAAATTAGTTAAtacaccaataagaaagagagttccaaacctctctgccaattaACAGCAAATTTTCAGTTTTCCCGtcctcactcagaccactcccagacagtcctagcaaaatttttgcttgagaaattgctatttgctaatatgctatttttgtttctttttgaccattttaactAAAAACAaccacagtaaggtacttaattgttacctagAAATTCTTTgacattgagataaaaatggctgcattggacctttaactgtTGAGGATCTAATTTGAAAGACATTATGCCAACAAATGCCTTGTTGTATGTGGCACTACCCATCTGTTCTATGCCTAGATCATCCTCTCGGGATTTAAAAGACATTGAAATGTGAATATTGATATTGATCCACTGTCAACAGCTGTATTATAGACACATGATACAGTATAGTGTTTTGGTTTCTTTCTCTTTTACAAAACTCTGACAACTATGCTTTCTTACATCGATCTGTCATAATGTCCACGTACTTGTCTCTTTGACTGACAGTAAAATGTAAAAGTGTCTTAAAGTCTTTGCTGATCAACATAGTTGAGGGACATCACTCAAATTTTGTATGCAAATTATTTCACTAGCAAATGTAGTGTAGGTCAATTGCCTAATTGTAGAAGAAAAGGCTAAATAtgcaaagggtgtgtgtgtgtgtgcattaattCGTTCCTATCTTTGAATCTGTTTTTgttgaaaataaaatgtattatttgttttAAGAGTTCATTCCATTGATGCATGAGTTATATTTGAAGTGGTCGTTTTAAACAGCAATGCATTGGATGCAGAATGACATTAAAGCTGTGATTTACTATTTGTTTCATCACACATTAAACACTTATAAAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792621 lncRNA downstream 1710 57994757 ~ 57995217 (-) True G1566883
TU1792618 lncRNA downstream 4280 57992375 ~ 57992647 (-) True G1566880
TU1792617 lncRNA downstream 5238 57991350 ~ 57991689 (-) True G1566879
TU1792609 lncRNA downstream 20405 57973405 ~ 57976522 (-) True G1566871
TU1792535 lncRNA downstream 52327 57943657 ~ 57944600 (-) True G1566806
TU1792631 lncRNA upstream 1785 58021416 ~ 58021624 (-) True G1566893
TU1792641 lncRNA upstream 10485 58030116 ~ 58030412 (-) True G1566903
TU1792644 lncRNA upstream 15190 58034821 ~ 58035090 (-) True G1566906
TU1792665 lncRNA upstream 54578 58074209 ~ 58078146 (-) False G1566923
TU1792702 lncRNA upstream 107051 58126682 ~ 58126884 (-) True G1566952
XM_036953348.1 mRNA downstream 30777 57939613 ~ 57966150 (-) False LOC110496593
XM_036953349.1 mRNA downstream 30777 57939613 ~ 57966150 (-) True LOC110496593
XM_021572952.2 mRNA downstream 148566 57838719 ~ 57848361 (-) True LOC110496952
NM_001246339.1 mRNA downstream 165761 57822733 ~ 57831166 (-) True dazl
XM_021572569.2 mRNA downstream 184036 57766500 ~ 57812891 (-) True rftn1a
XM_021572582.2 mRNA upstream 193598 58213229 ~ 58223672 (-) False sgo1
XM_021572583.2 mRNA upstream 193598 58213229 ~ 58223674 (-) False sgo1
XM_036953352.1 mRNA upstream 193598 58213229 ~ 58223674 (-) True sgo1
XM_036953371.1 mRNA upstream 218839 58238470 ~ 58295780 (-) False LOC110496870
XM_036953370.1 mRNA upstream 218839 58238470 ~ 58295781 (-) True LOC110496870
TU1790882 other downstream 1259580 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1508638 56481468 ~ 56488289 (-) True G1565122
TU1788592 other downstream 3331284 54660626 ~ 54665643 (-) True G1563253
TU1788544 other downstream 3344077 54638867 ~ 54652850 (-) True LOC110496860
TU1788095 other downstream 4101978 53889709 ~ 53894949 (-) True mrpl3
TU1792637 other upstream 7880 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 55992 58075623 ~ 58078146 (-) True G1566923
TU1792723 other upstream 147753 58167384 ~ 58167697 (-) True G1566972
TU1792861 other upstream 390868 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 849732 58869363 ~ 58870007 (-) True G1567875

Expression Profile