RNA id: XM_036953382.1


Basic Information

Item Value
RNA id XM_036953382.1
length 2804
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110496594
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58182477 ~ 58187784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTGgagcttgttctgcccactatgcttCATTTGCTCCCACTGTAAACGACATAGATAAAGTATCTTGGGTTTGTTATAACTATCTTTGGTCACATTCTCTGCAAGAGCAAACTTGCTGTGTGACGTGTAGAAGGGGCGGAAGGGATGTTTGTGTTTTGGTTCTAAATGGGAAGTTGCAAGAAGAAAGAAAAAGGTGGAGACGTGATCTGGGTTGTTGAAATTAATTCTGAAGCCCTAAAAGTGCAGTCAGACGTGTGGGACAGACACTGACCGGGGGATCTAACCAGGCCATGGCCAACAGGGGAGGCGCTACGAGACCCAACGGGTCTAATGCTGGGAACAAGATCTGCCAGTTCAAGTTAGTGCTGCTGGGGGAGTCGGCGGTGGGCAAGTCCAGCCTGGTGCTCCGCTTTGTCAAGGGCCAGTTCCACGAGTTCCAGGAGAGCACCATAGGAGcGGCCTTCCTGACCCAGACGGTGTGTCTAGACGACACGACGGTGAAGTTTGAGATCTGGGATACGGCGGGACAGGAGCGCTACCACAGCCTGGCGCCCATGTACTACAGAGGGGCGCAGGCCGCCATCGTGGTCTACGACATCACAAATGAGGAGTCATTTGCCCGGGCCAAGAACTGGGTGAAGGAGCTGCAGAGACAAGCCAGCCCCAACATTGTCATCGCTCTGTCAGGCAACAAGGCTGACCTCGCCAGCAAGAGAGCCGTCGACTTCCAGGATGCCCGGTCTTATGCAGACGACAACAGCTTGCTCTTCATGGAGACGTCGGCCAAGACATCTATGAATGTGAACGAGATATTCATGGCTATTGCGAAAAGATTGCCCAAGAGCGAGCCTGCAGCCGCTGGAGCTAACAGTGGGCGGAACAGGGGCGTCGACCTAACTGAAGCCGCCCAGCCAACCAAGGCCCCCTGCTGCAGTAACTAATGCGATGCCCACCTACTGCAGTGACTAATACGACCGATGCCCGACATTCGCTGCAGTAAACTAATGtgacgcccccccccccacaaaaaaactcTCTGATCTGCAGCAATGAAAAAAGTTGATATCTGaaccctccttcccttctcctctctgcagtaACTAATGCAAAGCAACACCCTCGTCTATATTTCTCAACTACGCCCCACCCCTCCCCCACTGGTTCTGCTGTTACTAATTGAGACTCCTCCCACCttcctctttttttcccccttaaATTAGTGCTGCCTTCCCTACCCCATTCCTCCAGACTATTGGCTAGCAGCAGGACTAAAGGGCGGGGCTCCTGTGATTTGGTCTCCTCTCCTGGGATAGATAGACTGTTTCTAATACGCAATCTCTCATGtccttttttgttttttgttcgatttttgttttgtttttcacagTTATTCATCGGAATTATGGATGCATGTATCACTACAAGGCCTGACatgatgatgaaaaaaaaaatctattttaactTTATTCAGCGGCACACAAAACATCTTAGAGTGAAAAGAGGAGTGTCTCCAAAAACGCTGACAgaaaaaacagagggagagatgagaggggaagagaggctcCAAAGGTTTGTTAGGGCTAAATCATAAGGAAGCTAAAGAAAAAACTGTTTAGCAGGGACTTGGATCCCTGCTAGTTTCTTTCTCTGTTGGTCCCTCTTTGTCTGGCCTCCTCTTTCTCTTGTGTAACATATTCATATGCTTTCTCAACTAAACCTTTTAGTGCCACTAGTGTAGTGTTGTTCCCTTCTCTCTTGGCCCCATCCCAGGGCCTTGCCTGCTTCTAGCGTTCAGTCCCAAATCAAACCTTAGACACCCCTGGTTCAGGAGTTAGTTAACTCATTTTTCCCCGGTggccgcagtgtgtgtgtgtcatgtgtgttTGTTGTCTTTGAGGATATTTGTATCACCAGACAGCCCAGTCCCCCTGtgtacacacactgacagacagtgTCTAAAGCACTTCCTATAGAACAGGGGATGTCTTCCTCATGCCTTGCACTAATGACGCTCATGAATATATCTTGTCATAATTACAGCCAGTgtgatataaatatatttataaataatATGCTGTAAATAGGGTAATTGACAGGACTAATGCTTGCTAGGGAGTTGTCTAGATAATCATTAAATAACAAAATACTGTACAGTTAGCAAAAAATACACTTTGTATGGGTTTGGagttatgtttttttttcacacacaaaaaaatctatTCTAATTGATGGTGGTCTTTATAAATGTGTGTAGTGTTGTTAAAAAAATGTACTTGCATTTCTTTAGTGGTCTGtcttatgttgtttttttttcaagAAAAACTGGATTTTTTtggttttctgttttttaatatTCTCTCTCGCATTTCATTAATAATTTTGTTAGCCATCTAAAGCTAAGAATCCCTGTCCAATACTCATTGTCCCATTGGAACTGAACTCACACACCATACACTGTCTGGGTGTAGAATCCCTGTCGCAGGAACAGATCGATTTGACAAAACTAACCGTCCGCCTGTCTTATAACGTCTCAGTAAGAATGTAACAATGTTGTAGGAACAATgtaacaacagtagtagtagtagtagaataaAACAAGAAAGACTGTTCCGTTCTACTGTTGGTACTAGCTGGTGGATCATGATGATGAATAAATGGATTAACTCTTAGAGATGTAAATAGTTTGTTGTTGCTGTGGACAGTTAAATGCAGATGGAAAAAAATAACAAAGGCAAGCATTTTACAGTACTGTTAAATAATGAccaaataaatacagaaataaaatgTAGAATTTACATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792012 lncRNA upstream 15276 58166996 ~ 58167203 (+) True G1566362
TU1792011 lncRNA upstream 16415 58165856 ~ 58166064 (+) True G1566361
TU1792004 lncRNA upstream 32242 58150012 ~ 58150237 (+) True G1566354
TU1792002 lncRNA upstream 35484 58146790 ~ 58146995 (+) True G1566352
TU1791999 lncRNA upstream 36154 58145375 ~ 58146325 (+) True G1566350
TU1792072 lncRNA downstream 119393 58307177 ~ 58308879 (+) True G1566416
TU1792097 lncRNA downstream 154656 58342440 ~ 58342708 (+) True G1566439
TU1792098 lncRNA downstream 155872 58343656 ~ 58343941 (+) True G1566440
TU1792102 lncRNA downstream 161746 58349530 ~ 58352481 (+) True G1566443
TU1792118 lncRNA downstream 190433 58378217 ~ 58379396 (+) True G1566457
XM_036953387.1 mRNA upstream 41860 58065484 ~ 58140619 (+) True LOC110496868
XM_021572575.2 mRNA upstream 247182 57893854 ~ 57935297 (+) False LOC110496592
XM_021572574.2 mRNA upstream 247182 57893855 ~ 57935297 (+) False LOC110496592
XM_021572577.2 mRNA upstream 247182 57906886 ~ 57935297 (+) False LOC110496592
XM_021572572.2 mRNA upstream 312118 57851179 ~ 57870361 (+) False LOC110496591
XM_021572580.2 mRNA downstream 1008 58188792 ~ 58212558 (+) False LOC110496595
XM_021572581.2 mRNA downstream 1008 58188792 ~ 58212558 (+) True LOC110496595
XM_021572953.2 mRNA downstream 138346 58326130 ~ 58338076 (+) True LOC110496954
XR_005037517.1 mRNA downstream 190911 58378695 ~ 58383251 (+) False LOC118941193
XR_005037519.1 mRNA downstream 192569 58380353 ~ 58383251 (+) False LOC118941193
TU1791846 other upstream 235716 57941097 ~ 57946763 (+) True G1566224
TU1791842 other upstream 261833 57916615 ~ 57920646 (+) True LOC110496592
TU1791820 other upstream 319433 57851221 ~ 57863046 (+) True LOC110496591
TU1791304 other upstream 1070516 57109333 ~ 57111963 (+) False LOC110496571
TU1791300 other upstream 1070639 57109333 ~ 57111840 (+) False LOC110496571
TU1792104 other downstream 176472 58364256 ~ 58377006 (+) True G1566445
TU1793356 other downstream 683115 58870899 ~ 58873690 (+) True LOC110496618
TU1793432 other downstream 769337 58957121 ~ 58958851 (+) True dlx5a
TU1793473 other downstream 837196 59024980 ~ 59035335 (+) True sem1
TU1793654 other downstream 1122200 59309984 ~ 59312723 (+) True G1567716

Expression Profile