RNA id: XM_021572584.2


Basic Information

Item Value
RNA id XM_021572584.2
length 1967
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110496599
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58302827 ~ 58306500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTGCTCTTACctcacctttcctccctccccctctgcctctcccatGTGTCAGCTGAGCCACAGAGGGATCGGCAGGGATCGTCTAACCACAAACGAACTGCCCCTATCTACAGATAAAGGAAGAGGAGTGTTAGCCCTAACATTTTCTCTCATTCATTTTCGCTGTTTTTCCACCCTGGCTCcttgggagagaagagagtagcTTGTCTGctgttctctctttttctcttgttctgtcctccctgtcctgggATCTAATGAAGTAACAGCCCTAGGATATTGACTGAAACAGGTGGAGGATCCCGCCAGGGCTCAACACAGGCACAGTATGGGTGACGAAAGCTACAACTTTGTCTTCAAAGTGGTTCTGATTGGTGAGTCTGGTGTTGGGAAGAGCAACCTGCTGTCACGCTTCACCAAGAATGAGTTTAACCATGACAGCCGCACGACCATCGGAGTAGAGTTCAGCACCCGCACTGTTCAGCTGGATACCTTCACCATCAAGGCTCAGATCTGGGACACGGCAGGGCTGGAGAGATACAGAGCCATCACCTCAGcgtaCTACAGAGGAGCGGTGGGTGCTATGCTGGTGTATGACATCACCAAGCACCTAACCTATGAGAGTGTGGAACGTTGGCTGAAGGAGCTGTACGATCACGCTGACCCTCACATCCTGGTCATGCTGGTTGGCAACAAGAGTGACCTGGAGACCCTGAGGACTGTGCCCACCGTGGAGGTCAAGGAATTTGCAGAAAAGAAGGGCCTCTTGTTTATGGAGACGTCAGCTCTGGATTCGACCAACGTTGAAGCTGCTTTCCAGGAAGTTCTCACAGCGATCCACAAGAAGGTGGCCAGTCGAGAGGTGACCCGCGGGTCAATCAGTGCCGTGACCCTGTCCAGTGCTACTGGAACGGCTAGCGAAGTCCAGGAGGAACGTAGGACTTGCTGCAAGAACCTCTGACCGGTTCTGACTAGCTCTGGCCAGTTCTTTCCGGTATTAAACAGAATCTTCCTACTCTACCCTCATTCAGGATTAAGGGAGTCTATGTTGATGACTCCAGGAGGCATAGCtgtgggaagtaggggtgctcaGGGTGCTGCAGCACACACCTGAAAATGaaagtgcactgggcctttactagtattGTATTAGAAGACCCATataaattccccccccccccccccccccccccgtcggCAAAAATATCGCAGCACCCCAACCACCGAACACCTTCCCACATCTATGACAGGAGGGCTGTCTGAACCAAAGACCAGGCAGTCCACAAGACACAGGCCACATTTACACTTTGTCAATAAATACACTATTGGTGTCACCTATATTCTCCCTGTTTGGCGAAAGGTTGCAGACCACTTGAAAATATTTGTGTGGaaagtttttttaattttttatgctTGTTACCAAATACGTCTTGTTGGGGTTTATTTGAAAGGAGGAACTGCATTATTTTTGGATATTCATCATGTGCATGTATTGTTTGTAACCAAGATGAAAAAACTGTAGGAGGTTTTGTGTTGACTACATGGGAACACTTGTGAAGGTTTTAACTTAATGAATAGTATGTGTGGCTCGGAGACCAAGTAGAAAAGTGACTTGCTTCATGATTTTGAAACATTGACGCTCGATATTGCAACAACTATGCACTGTATCTAATCTTTTATGACAAACTTGTATCATTCATCTTTGTGATGGGAAAAATGCTTAGAGATTTCTGGTTTCATTCACTATTCATTTGCTATTCTCCTGTAGAGGGCAGTGCTGTTTTCAAGACATCTATGGTGTCTCCAAAATACACAGTTGAAAGTGATGTCTCCAAATCAGATCTGCTATTGATATCTAACTTTACCTCACACATATATAAGCAGTAGTTTATGAAGAGCACACACACAGGAGTTTCAATCTTATAATAAAACATCCCGAAATGGATGGCGTCATCTATAATTGA

Function

GO: NA

KEGG:

id description
K07906 RAB25; Ras-related protein Rab-25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1792763 lncRNA downstream 90298 58210670 ~ 58212529 (-) False G1566997
TU1792849 lncRNA upstream 53031 58359531 ~ 58360223 (-) True G1567068
TU1793115 lncRNA upstream 160182 58466682 ~ 58467437 (-) True G1567288
TU1793162 lncRNA upstream 227263 58533763 ~ 58535909 (-) False G1567326
TU1793166 lncRNA upstream 229547 58536047 ~ 58536868 (-) True G1567326
TU1793176 lncRNA upstream 246805 58553305 ~ 58555382 (-) True G1567334
XM_036953370.1 mRNA downstream 7046 58238470 ~ 58295781 (-) True LOC110496870
XM_036953371.1 mRNA downstream 7047 58238470 ~ 58295780 (-) False LOC110496870
XM_021572583.2 mRNA downstream 79153 58213229 ~ 58223674 (-) False sgo1
XM_036953352.1 mRNA downstream 79153 58213229 ~ 58223674 (-) True sgo1
XM_021572582.2 mRNA downstream 79155 58213229 ~ 58223672 (-) False sgo1
XM_036953356.1 mRNA upstream 874 58307374 ~ 58319520 (-) True LOC110496600
XM_036953357.1 mRNA upstream 43027 58349527 ~ 58412645 (-) False LOC110496601
XM_036953359.1 mRNA upstream 43027 58349527 ~ 58412667 (-) False LOC110496601
XM_036953358.1 mRNA upstream 43027 58349527 ~ 58412935 (-) True LOC110496601
XM_021572588.2 mRNA upstream 137148 58443648 ~ 58573152 (-) True LOC110496602
TU1792723 other downstream 135130 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 224681 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 275037 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 1565480 56728352 ~ 56737347 (-) True LOC110496560
TU1790620 other downstream 1814538 56481468 ~ 56488289 (-) True G1565122
TU1792861 other upstream 103999 58410499 ~ 58411129 (-) True G1567080
TU1793871 other upstream 562863 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 564437 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 698345 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 848528 59155028 ~ 59157044 (-) True G1568017

Expression Profile