RNA id: XM_021572594.2


Basic Information

Item Value
RNA id XM_021572594.2
length 3174
RNA type mRNA
GC content 0.47
exon number 13
gene id si:ch211-13c6.2
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58629316 ~ 58640812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGATTAAACAGGAAGTGGGTTTCTAAAAGCCAGCAAGCCATTTTTCTCTTTTATTTGATCGAAAAATAACTAGCATCGTTTGCAAAAACGGTCTTATATTTATACTGTGTGAAGTACGGTTGTCTTTTAACCTCGTTTTCGCTAAATTAGCATTAGCTGGTTATTCACCCATCAGCTAACGTTCGTTTACTAACAACAGGGTATTTAGATCGGTTCAGCTAGCTAGGTAAGTGGCTACATTTCAAATTTCCGGGGCAACAATGGAAGGTTTAGAAACGACATACGAGGATTCTAATGCCGAGGACTACATTGATTGCGCTATCTGTACCAGATCCATTAGGGGTGAAACCCTGTATAAGATCCACCGGACTACAGTACTACACATGAGGAAAGAGGACCACCTGGTTTCTACTGGGCGGGCTACCAGGGATCATGAGTTACCAGATTTCACGGATATCAAACACTACCTCCAATACCTGAAACTTGATGAGCCAATCATCGGTTTGAGTCTTCTGGCGGAGGTGGAGCCAGTCTCCCATGACCGTCAGCCTGGCCCCAGATACATCTGCAGATTATGCGATCTGGAGGCATCCTTACCCAACATGGTCAATCATTTAATTGGTCGCAGACATCGACAGAATTACCTGGATATGAAAAGGAAAGACTTGGTGACATGGGACAGTACCAATGCCCTGGCTCAATCGGGGAAGGCTTTACGAGCCATGGCGGAGATTGTGGAAAGACAGAATGGGCAAGGAAGTCCAAAGCCTTTGAGGAAAAAACGAAATGTGGGCAAATTGAACAGTTCTAGAGTTCCCCCGAAAGAAAGAGGGGCCAAGAATCAGCCAAAACCAACACATTCTCATCCATCAGACATGAGGCGGGAAGGACACCTGCATCCAGGGAGGATGGATTTCCCGGACGGGGAGTACCACCACAGAGGAGGGCGTCCTGAAGATGATCTATATAGACCTCCCTTCCATGAAGACGATCCTTACTTATTGTCCGGGGCAGTGCGAGAGGTTTACCTGAGAGGAGGAGACCCCAGCCTCCGTGGTTTTGAGGAAGACGAGCTTCGTAGAGCAGGCTATCATGAAGATAACCGTCGTAGAAGGGATCACTACCTTGAAGAACAAATCCATGGTCAGGATTATTTGGAGGACATGCGTAGACGAGAGTTTTTGGAGTCCAGGCCAGGTCACCAAGAGGAAATCCCTCATCGCCAAGCATACCCTGAAGAACCTCCACGCAGGAGTGTCTACCCGGAGAATGATCCTCTCAAACAGTTCTATTCTGATGAGGTTCTCCGTAGAACATTTCATGCTGCTGAAGCTTCTAAGGAGCGGGCCTTTCGAGAAGATGAATCACCACATGGGAGGAGCTATCCTCATGTTCCGGCCTATCCGCAGGAATTTCCTCCTGAACGTGCCTATCCTGACAAAGCTCCTCTCTGCTTTGAACACGCCCATGGAAGGGCAGCCCACGGACCACCTGTTCATGAAGACCCTTACTCCGAGGATACCCGTAGAAGCGGATACCTTGAGGAGGCACAACGCAGGGCGTACAATGAGGAACAACATGGGCCAGCCTATCCAGAAGGCAACCCTCATAGGCGATCTCACGACAGGGATCCAAACGGCCGTGGCTACCCCAAGGGGCCAGAAGGGCAAGGAGCTGCTGATGAAGACTTGAGGTTCCCAAATCAAATGGAGGGACCAATGGAGACAGGGGGTCAAGGCAGCAGGGAGCATTTGTTTGACCTTGTCAAGGCCATTCGTCAGGAGGGGAGGGGTCCACAGCATCCAGAGATGGAGCGAGGGATGGGACCATCAGGAATGAGGGGGACTCCTCAGAAGCCAGCAGAGGGTGGCAGAATGAGAACAGAGATCCCCGAACCTTTCCGGCGCTTCCTGGAAGGAGCCACAGATGACCACAAGAGCCCCGGGAAACGGAAGAGAAAGAGCAGGTTCTCTGATGCCACAGAACAGGAGGAGGACGTGTTGAAGTTAATGCAAGCTGGTGACAATAGAAGAAGGTCAGAACCTTTTGCCAAGCCACAGGGTGCTTATCAAGGAGTAGCAGGCTCCAGACCAATGGCAGAGGCAACTCCAGACACTGGGAATGTTTTGGATGTACTGAATAACATACAGGTTGAGAATGTGGAAGAGGCCAACTTCCTGAAGGACAAGCTGTGTAACCTTCTGAAAGAGTTCCAAGACAAAAAATATGAGAAGACAGCGGTAATGCCTGCGTACAAAAGCCTACATCCAACAGTAATTTCCAAAGAATATAATCACATGAGCAAGGATCACCTGGAAAATCCCAGAGATGACTATGAAAGAAACTACAGAGAAGTGCAAGAGGAGAGACATTACGAAGGCCATCCTCCCAGACACTCAAAGGAACGCTCACAGGAGCGCTACACTCCAGAGACCCCACAGGATCCttacagagacacagacatgagaatggagaggagagctCAATATGAAGAGGTCTTTGGGCATGTTGAGATGTACCCACAATCTCATGCTCGTCCAGAGGAGCCAATGGCATACCCCCACGAGAGTTGTCAGGGGCAGATGTACCCTCGTGATTACCCACCTGCAGGGGATCTTCACCATCCATTCAATCCTACACCCCCAATACACTGGGAGCGGGGGTACAGGACGGGTGTCCCTCAATCCACCAGCCTAGACAAAATCACCTCCACTCTCCTGGAGCTTGTGGCAAGGAAAAAGTGATTTTACAGTAGAACCACCATGTGTGTAAAATATTTGTATTGATCTGAGCTCAACTGTATTTCTGTTGGAAGTTTgcttttgaaatgtttctacactTTTATTTGCTTTAATTGTTCATCTTGATGGCTAGATTTAAGGGTTAAAGGTTTTGTAGCAATTATTTGACATTAGTAATCCGAAAATATGCTTTGAACGGTGTAGACATGTTGTTGAAAACAAAATGATTTCTTTTGAATAACTTCTATTCACTTAACACTGCATTGTAACTGACAATACAACATGTGTGACCACAAATCAGTTCTGATCCAAACAAGATGGTTAAAGaaatattacactgaacaaaaatataagcgcaacatgtaaagtgttggtcccttgtttcatgagctgaaataaaatatcctagaaatgttccatacacaccaaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793210 lncRNA downstream 40334 58588360 ~ 58588982 (-) True G1567353
TU1793212 lncRNA downstream 45260 58583826 ~ 58584056 (-) True G1567355
TU1793190 lncRNA downstream 51564 58577525 ~ 58577752 (-) True G1567348
TU1793176 lncRNA downstream 73934 58553305 ~ 58555382 (-) True G1567334
TU1793166 lncRNA downstream 92448 58536047 ~ 58536868 (-) True G1567326
TU1793225 lncRNA upstream 21801 58662613 ~ 58662887 (-) True G1567368
TU1793237 lncRNA upstream 53160 58693972 ~ 58694822 (-) True G1567380
TU1793296 lncRNA upstream 98953 58739765 ~ 58742842 (-) True LOC110496609
TU1793856 lncRNA upstream 181367 58822179 ~ 58822505 (-) True G1567865
TU1793863 lncRNA upstream 231044 58871856 ~ 58872355 (-) True G1567871
XM_021572591.2 mRNA downstream 19639 58589095 ~ 58609677 (-) True LOC110496603
XM_021572593.2 mRNA downstream 19648 58589095 ~ 58609668 (-) False LOC110496603
XM_036953364.1 mRNA downstream 19649 58589095 ~ 58609667 (-) False LOC110496603
XM_021572589.2 mRNA downstream 19651 58589095 ~ 58609665 (-) False LOC110496603
XM_036953367.1 mRNA downstream 19656 58589095 ~ 58609660 (-) False LOC110496603
XM_021572597.2 mRNA upstream 221 58641033 ~ 58661466 (-) False LOC110496605
XM_021572596.2 mRNA upstream 3490 58644302 ~ 58661462 (-) False LOC110496605
XM_036953376.1 mRNA upstream 3501 58644313 ~ 58661464 (-) True LOC110496605
XM_036953374.1 mRNA upstream 35405 58676217 ~ 58691146 (-) False LOC110496608
XM_036953373.1 mRNA upstream 35408 58676220 ~ 58707964 (-) False LOC110496608
TU1792861 other downstream 218187 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 461619 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 551170 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 601526 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 1891969 56728352 ~ 56737347 (-) True LOC110496560
TU1793871 other upstream 228551 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 230125 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 364033 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 514216 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 1088367 59729179 ~ 59736780 (-) True LOC110496637

Expression Profile