RNA id: TU1793296


Basic Information

Item Value
RNA id TU1793296
length 2406
lncRNA type sense_over
GC content 0.38
exon number 5
gene id LOC110496609
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58739765 ~ 58789014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGTACTTTGACCAGGCTCATGACCTGGTTATCAAGGAGACAGAGCTGAGACAGGTGGCCTATGTCTTCTGCTGCAGCAACTCTACTCTACATATAGAGGGAAAGATCAACTCCATCATTGTGGATAACTGTAAGAAGCTTGGTCTGGTGTTTGACAACATCGTTGGCATTGTGGAAATAATCAACTCAAAGGACATTCAGTTACAGGTGATGGGTAGAGTTCCTACCATCTCCATCAACAAGACAGAGGGATGCCAAGTCTACCTGAGTAAGGACGCTCTGGACTGTGAGATCGTCAGCGCCAAGAGCTCTGAGATGAACATCCTGGTACCACAGGATGACGactatAGGGAGTTCCCAGTTCCTGAGCAGTTCAAGACCGTTTGGGACGGGTCCAAACTGGTGACAGAACCCACAGAGATCGCTGGCTGATTGCTGATACTTCCTCCTCATCGAGATGATCTCTTATCACCCCCATTTATTCCTCATCTATTTTCCCTCTCCGTCAGAGGTTTCACAAACCTTATAGGCTGGTAATAAAAGGGATCCTGTACCACACAAACCAGACAGTGTAACTGACTGGCTAGTAGTGCTGTAGGTCAGTTGATTGTACGCCTGATTGTATGCATTAAGATTACATTATATTGTTTCCTCTGCACTTTGAAATTGTAGATTGTCCTTGAACTGTTTGTTCAGCTTATTTGTTGCAGAGCACTCTCCTTCACAAAACTACTGTACTATCCACAGAGTTATGGTAAGCTTACTATTTAAACATGCAGTATTTTTGTCAGGTTTCTTCGTGTAGAACTTCTGTGTTTGGCAAATAAAGTTGCATTAAAATGAGGAATAGTGAGGAAGTGTAGCCTTTATGTTAATCTGTTAAATCTGTTTATGCAAAATAAGGTAAAGACTCTCAAACAAGTATCTGGCACTTACTTGTGTGTGCCATAACATAAAAGGTGTTTATGCAAGTAGGCTATGTGTACAACATAATTACTTCTTTACAAGTTAACAGCTGAAAGACCTACCCTGATAAGGCAAACCTTGTATTAGGATATATTATGGATGTGTCTTTTGATTGAAGAGAACCTTCAGATTCCATACTGGCAttgtaatgttgttgttttatGCTTTATGCTTTGTTGTGACTTGATTTGAGAGGCAGAAAGTATTGAAGAATGAGGTCGAGTTGACTTTTGATTTGTATGATATGTAGGATGAAGAGAATGTTCCACGGATAAAATTGAATGGCCAGTTTGAAACTATATGGTCAGTTGAGAGGGAGTTGTAGAGTATGTTCCACAAGATGCTGAAGCATATACTGTTTTGGTTTGCTTTAATACTCTGCGATACTAAACTATTCACATCTAGCTGTTCAGTTAACAGTTGTATCATGTTTATACTGCATGCTAGTGttctcccagctagcacatttggttccttggaagttgtgggagcGTATGTTTTTGATTCCACATTTCTGGGAAGGAAGCCATAAGTTTCCTGACCAGTAgaactgattttttttttgtaacattCTGTGAACGGAAGTAAAAATGTTGCCTGTTCTGGGAACttacatttttaggttgcagtgaggttctgagaacattttactatggttccctgaaagttttcctggaaAGGTTTTATTAATGTTCTGAGAATGGTAATGTaatttgaaggtaattaaataatgttctgagaacatgtttcaataagacttctAATAACACCGCTAGCTTAGTTTAACTGGTTTGAACTCCAAACACAGAACAAATTCAAATGTATTTGCTTCGGCATTAATCatacaattgtatttttttattgtggTATGGCGTCAGTGAAATTCAAAACTATTATCTTCTCTTCTTTATCCATGGAATTATTCCACtacgccaccaggatggagctgaAAGTACTACATTTCCCACCACAGAAACATATAGCTCTCAAAAAATGTGTGAGCTGGGTATCCTGCTCCATTCCtagaaggttgtatgcaaaataaccgtAGGGCAACAACACTCCAAGTGTTTAAAGCCAAGCTTTAACAAACTAATGGTTCTCAGAACTTTGTGCTAGCTGGGGTAGCACTGAATTGGGAGTGGAGTGGGTTTTTAAAAACacgtttaaatatatatatatactagccTATAGTGCATTGACAGCAGACTTAATTGACAAAGTGAAAGATAATAGCAAGATATATCTTAAACTAGTTATCTTATTACTTTTCCTAACCCAAATATATGGTTGTAGCATCACCAATAGATTGCTGTCACCAGCACTGCATAAGCCTTAATATGCTTAGATACAAATCAAGATAGAGAAATGTTTTTCATAATGTTCAATGTCTACTGAACTATTGTCAATATGCATACCTGTTAGTCTGAATACACCAC

Function

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793237 lncRNA downstream 44943 58693972 ~ 58694822 (-) True G1567380
TU1793225 lncRNA downstream 76878 58662613 ~ 58662887 (-) True G1567368
TU1793210 lncRNA downstream 150783 58588360 ~ 58588982 (-) True G1567353
TU1793212 lncRNA downstream 155709 58583826 ~ 58584056 (-) True G1567355
TU1793190 lncRNA downstream 162013 58577525 ~ 58577752 (-) True G1567348
TU1793856 lncRNA upstream 79337 58822179 ~ 58822505 (-) True G1567865
TU1793863 lncRNA upstream 129014 58871856 ~ 58872355 (-) True G1567871
TU1793878 lncRNA upstream 143066 58885908 ~ 58892166 (-) True G1567880
TU1793885 lncRNA upstream 168647 58911489 ~ 58911850 (-) True G1567886
TU1793891 lncRNA upstream 185022 58927864 ~ 58932641 (-) False G1567889
XM_021572607.2 mRNA downstream 2497 58725463 ~ 58737268 (-) True LOC110496611
XM_036953355.1 mRNA downstream 16007 58708720 ~ 58723758 (-) True LOC110496607
XM_021572598.2 mRNA downstream 16018 58708246 ~ 58723747 (-) False LOC110496607
XM_036953354.1 mRNA downstream 16018 58708246 ~ 58723747 (-) False LOC110496607
XM_036953372.1 mRNA downstream 31746 58676220 ~ 58708019 (-) True LOC110496608
XM_036953381.1 mRNA upstream 50457 58793299 ~ 58808572 (-) True rbm24a
XM_021572610.2 mRNA upstream 81369 58824211 ~ 58852524 (-) False LOC110496613
XM_036953390.1 mRNA upstream 81369 58824211 ~ 58852524 (-) False LOC110496613
XM_021572609.2 mRNA upstream 81369 58824211 ~ 58852541 (-) False LOC110496613
XM_036953389.1 mRNA upstream 81369 58824211 ~ 58852541 (-) False LOC110496613
TU1792861 other downstream 328636 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 572068 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 661619 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 711975 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 2002418 56728352 ~ 56737347 (-) True LOC110496560
TU1793871 other upstream 126521 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 128095 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 262003 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 412186 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 986337 59729179 ~ 59736780 (-) True LOC110496637

Expression Profile