RNA id: XM_036953381.1


Basic Information

Item Value
RNA id XM_036953381.1
length 4266
RNA type mRNA
GC content 0.47
exon number 4
gene id rbm24a
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58793299 ~ 58808572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGGAGTTATGGGCAGCGCTTTTAGGAATGGGTCCGAAACATATTTAGTTAGTCAAGACAGTTACGGAGAAGAGTTGAAAACACCTGATGATCTCTTGGACAATCCGCTCCATATCTCATTTAAGTGTTAAAAGATAATCTACCTCGAATCTTGATTTTTGTTGAGTTTTGTGTTATTTCTCTGAAGCCTCTCCAGTTGTAAATCTCATATTGCTAATTTTTATAGAAATACTTAAAAATAACGTAACTAGGTGATAAGGAAACATTGCACTATATTTTTAATTGTTTGTATTCTACTATTTTGCACTAAAATATTGGTGAAGATGCACACCACGCAGAAGGACACGACCTACACGAAGATTTTTGTCGGGGGTCTTCCGTATCACACAACGGATTCCAGTCTCAGGAAATATTTTGAAGTGTTCGGAGAAATTGAAGAAGCTGTCGTGATTACCGATCGACAGACCGGCAAATCCAGGGGGTATGGATTTGTGACGATGGCTGACCGCTCGGCTGCAGACAGGGCCTGTAAAGATCCGAACCCCATCATCGACGGCAGGAAAGCCAACGTCAACCTGGCGTACCTGGGGGCCAAGCCACGGGTGATGCAGCCAGGTTTCACCTTTGGTGTTCCACAAATTCATCCTGCCTTTATCCAAAGGCCTTATGGgATCCCTGCTCACTATGTGTACCCTCAGGCCTTCATGCAGCCAAGCACCATGGTCATCCCTCACGGCATGCAGCCCAGTGCCGCCTCTGCCTCCACCGCCTCCTCCCCGTACATCGACTACACTGGAGCAGCCTACGCTCAGTACTCTGCCGCCGCGGCTAGCGCTGCTGCCGCCGCAGCCTACGAGCAGTATCCCTACGCCGCCTCCCCTGCGGCGGCCGGGTACCTAACCGCAGCCGGATATGGCTATGTTCAGCAGCCCCTGGCTACGGCCGCACCGGGTTCAGCCGTCGCTGCGGCCGCAGCCTTCGGTCAGTACCAGCCTCAGCAGCTGCAAGCAGACCGCATGCAATAGCAGCCACTGCAGCCATTGGACACAATGGGATGGGAGGCCCGCGGCCGGCCTCGGCTGATTGGCTGTGAAGAGGAGAGGacgatgaagaggaagagagaggggccgTGTCGGTAAGAgggtgaagatgatgatgatgatggtgaggtGGGAACTCCATACAGTAGCTTTCCAACTTGCTGTGTTTAAACCAAAAACTTTATAAATTCACAAAACTAAGTAAGGAAGGTGGATTTATCCTTatgattattattgttgttattaatataaaTATTACTATCATTATAATTGTAGTAGAGTATTTATTTCTAGAGGAGAAATGCAACAactaatcacagtggttgtagctTGGTGTAAAACATGACTTTATGTTCCATTGCTGTCATTaacataggagagagagagcgttctCTTTATGGGACACTTAGACGTGTCCCGAAGTGCCCTTGCAACCTATATTTACTATCACATTTCGAGGGCTCTTGTCCTTCTGTCTTTTCAAGTGCATTGAAGTAAATTGTCTGATAATCAGGGAAATGTATCAGTTTCCAGTGTGTTAGTAAAGACAACCTCTGCATGTCAGGGAGTAGTTGAAATAACTGTGGAGAAAAGGAGAAGATTTGTAGCTCGTGTCACACGTTAAGAACTACCTTTTTAACTTCCTGATGCTGAATGTCCCTTTTTTGACTCTGTATCTTGACCTCTTGACCTATGCAAAGCAAACAATTTACCAGGAGACAAAAAAACTGCAGGAATAACCGAAAATGTCGTCAACTCTTCAAAGGGCATCACTAACAATATGAAGGCaactcacagagagagaaagaaaagcatGTTTTCAGACAATGAGAAGCACCAAATCAGTTAGTCTCAAACACATGGCTGcatgcaaacacacgcacacacacacacgcatacacagttGCGTACATAGTGGTAAAGGTCAATGGGACCGGTCGTGCTCTCTGCCTCTGTGCAATGGGATctagtcagagagaaagagagagggagggagagggagagagagagggagcagctgGGGAGGGGGCTGGCACAGTTCGCCCAGCGCCACACAGACGGATCACTCTGGAAATAACGCATCACTTGTCCTCATTTGTTGAGCTGTCACATTTTAATCCCAGGGCCCATTTGGGaactgtctcttctctgtcctgcctgcctggccctgtcagcacttccacctctgtcctctatcctctgtcctctgtcctagAGCCGACCGGCTGGGCTGgtgtcaggtacacacacacttccctcctATGCTAACCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACcccctgaccctgtacccactcCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACcccctgaccctgtacccactcCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCTGGCCCTGTACCCACTCATCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGACCCTGTACCCTGGCCCTGTACCCACTCATCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCTGGCCCTGTACCCACATTTCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAATCCCCTGGCCCTGTACCCACTCCTCACAGCCTCACCAACCCCCTGGCCCTGTACCCTGGGGTGGTGATGGGGGAtgtagagaaggggggggggggggggctgcaggCGCTTGACATATGAATCTATGGGTTCTTAGTGTGCCTTACATTTGTATTGCTATTTAAGAGAGTAAGAAAGGAGATCTACTATTTAAGAGAGTAAGAAAGGAGATCTACTATTTAAGAGAGTAAGAAAGGAGATCTACTATTTAAGAGAGTAAGAAAGGAGATCTActatttaaaatatttattttcagaTTGGACTATGTTCTATGCGCTCTAAGGACAGAGAATTAGTGGTGGTACTGTATTCATTTTATTATGTATTCATCTCAAGGTATATAAGTTATTGGGTAGATTTAGttgtattataattattattaacaTACTCAACCAAAAATGTTAATGTAGGATTTATACAAGATACAATTCTGTATGTGCACTGTACAATTATACTTTTTGCCTTTTGAAATCTTAGAATAAATATTGGTTAGTTGAATGCCTTTTCTATGAAACCTTATTTAAATGCAGGCCTGTTTGCGTGCAGACTGTTACTCTTTTGTGTTTAGAACGGTTGGAAAAGACAAACAAAATCCTGACAAAAATGAGCTAATTGCTGCTTTATACATTAGAATGTATAGTTATTGTCATGGTTCGGATAGTTGTGCTTCTATTGCTTTTAATATACATCAGATGAGCTATTTTACACTGTTGGGAATTTTTATACTTGAACTATTTCTTACAAgggaaaatatgaaaaataaatgacaaaaaaaaacattttaaggaAGCTTTTTATTGTCACTGGATTAAGGCATGTACAGTGTTATTTACTATATTTAAATGCAAAGGTCCTGTTGGTAGTAAAACTGTATTTCAGAATTTCAACACTATTTACTCTAAATTGAAATAAAAGGTTCTATATTTAAAAACAatactgttgttttttttaagatGGATGTTGAATTGATGTTAAGTTGATGTCAAATTGATGTTAAATTGATGTTGAATTGATGTTGTCTTCAGGTTGGGTGTCTTTTTGTGGGCCTTAGTATGGAGGCCTGAGACAATTGATAGTCTGCAGAGCAAATTAGGTATGAAGCTGCCAAAGCTGTTGATGTCTATTAAACACCTATAAACAGA

Function

GO:

id name namespace
GO:0003228 atrial cardiac muscle tissue development biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0010830 regulation of myotube differentiation biological_process
GO:0060297 regulation of sarcomere organization biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793296 lncRNA downstream 50457 58739765 ~ 58742842 (-) True LOC110496609
TU1793237 lncRNA downstream 98477 58693972 ~ 58694822 (-) True G1567380
TU1793225 lncRNA downstream 130412 58662613 ~ 58662887 (-) True G1567368
TU1793210 lncRNA downstream 204317 58588360 ~ 58588982 (-) True G1567353
TU1793212 lncRNA downstream 209243 58583826 ~ 58584056 (-) True G1567355
TU1793856 lncRNA upstream 13607 58822179 ~ 58822505 (-) True G1567865
TU1793863 lncRNA upstream 63284 58871856 ~ 58872355 (-) True G1567871
TU1793878 lncRNA upstream 77336 58885908 ~ 58892166 (-) True G1567880
TU1793885 lncRNA upstream 102917 58911489 ~ 58911850 (-) True G1567886
TU1793891 lncRNA upstream 119292 58927864 ~ 58932641 (-) False G1567889
XM_036953360.1 mRNA downstream 4285 58740339 ~ 58789014 (-) False LOC110496609
XM_021572603.2 mRNA downstream 4286 58740339 ~ 58789013 (-) False LOC110496609
XM_021572607.2 mRNA downstream 56031 58725463 ~ 58737268 (-) True LOC110496611
XM_036953355.1 mRNA downstream 69541 58708720 ~ 58723758 (-) True LOC110496607
XM_021572598.2 mRNA downstream 69552 58708246 ~ 58723747 (-) False LOC110496607
XM_021572610.2 mRNA upstream 15639 58824211 ~ 58852524 (-) False LOC110496613
XM_036953390.1 mRNA upstream 15639 58824211 ~ 58852524 (-) False LOC110496613
XM_021572609.2 mRNA upstream 15639 58824211 ~ 58852541 (-) False LOC110496613
XM_036953389.1 mRNA upstream 15639 58824211 ~ 58852541 (-) False LOC110496613
XM_036953391.1 mRNA upstream 21352 58829924 ~ 58852541 (-) True LOC110496613
TU1792861 other downstream 382170 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 625602 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 715153 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 765509 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 2055952 56728352 ~ 56737347 (-) True LOC110496560
TU1793871 other upstream 60791 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 62365 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 196273 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 346456 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 920607 59729179 ~ 59736780 (-) True LOC110496637

Expression Profile