RNA id: XM_021572609.2


Basic Information

Item Value
RNA id XM_021572609.2
length 5775
RNA type mRNA
GC content 0.53
exon number 21
gene id LOC110496613
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58824211 ~ 58852541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGTTCTCATTTAGGTGAAGCTTCCTGGCATTAGGGTATGTCGGAGGACTGAGCGCGCTGAATTCTAGGATATGACAGGACGACTATCTGGCGGCTAGTTGAGATTCGATCTAGCCATGGCTGCCACGGGTGGAGGGAAAATTAGAAGCAGAAGATATCATATCGCTTCTAAACCTTACGCCAAAAGCAAACAGCAGCAGTCGGGCCTGATTAGTCGAGTGACAGACACAGTCAAGAGCATCGTTCCTTCCTGGATGCAGAAATACTTCACAAACGGGGAGGCTACAGAAGGGGGAGGGGCCATGTTGGGGGAGGAGCCGAACAGTCAGGCCCCTCCTAATGGCAGTGAGGAGGTAGACCCCCTTCCTGATGGACGGGACTCTGCGGAGCCCGCTACCAGTAATACAGagCCTTCGACAAGCAGGGTATCCCTGAACTTCCAGGATGTTCTGTCGAGGCCCCCCCTCAATCGCTCCCACCTCCATTTCCCCTCCCTGGACTCCACCCCGGCCCTGGGGAGCCCAAGCTCCCTTTTCTCccagccctccacctcctccgcccCCTTCGCTGGGGGCCCCTTCGCTGGGGCGTCGACAAGCTTCTCCCTAGTCAAGGAGCTCAAGGACAATAGCTCCCACCACGAGGATGACAATATCTCCACCACCAGTGGCTTCTCATCACGCGCATCAGAAAAAGAAGTACCAAACTTTAAGACCACGTCGCTACCCCAGCTCTGTTCTCCGGAGATGGACCGGCCCCAGCAGTCCCAGTCCAGTCTCAAGAAACCTGCATTCAACCTGTCTGTCTTTGGGACTTCCTCCGCTGTGAGTGTCAGTCAGTCAAGTCAGTCCTCCACTTCCACGTTGAACAGTTCAGTGCTGAACTCCAGTCAGTTGGGGGATTCCCCCTTCTACCCAGGGAAGACTACCTACGGGGGAGCAGCTGCTGTTAGAACAGCCCGCTCACGCACAGCCACACCTTACCAGGCTCCATTGCGGAGACAGATCAAGGCCAAGCCTGCTGGGGCTCCGCCCTGTGGGGTGACCAGCGCTACTGCCCGACGCATCTTACAGTCCCTGGAGCGCATGTCCAGCCCCCTCGCTGATGCCAAGAGAATCCCCTCTACGGTGTCCTCTCCCTTGTCAAAATTCCCTGATGGCAGCACTCTGGACCTTTCACATTTCCAGGCCCCCAAAAAACGGCTGGACTCTCCCCTCCCCCCAGTCCAGAAGTTGGTTATCCCGGCTGCAGCGTTGGTGTCTGGGAGCCGCTCAATGTCCTTCAGGCCCTCTCTGACCCCCGGGGGCCTGGCCCAGACCCCCGTAGGCACGCCCACAAGACAATCCCCTCTGATTCCTGAAGCAGTGGCAGATCCTTGTCAAAGCACAAGCAGCAGCAGCCTGCCCACCTACCCTCTGTCCAGCACTCCTGCAACCAGCAGCACAGGGTCAGGAGGAgggaagatgaagagggagaggaCCAGCACAAGACCCTCGTCCAAACGACCTGAAGACGAGATTGCTGAGCTACCGGCCCTGCCGGCCAACACCTCAATCGGTCTGCCCAGCTTCAGCTTCCCCAACCCCAAGCCTGTTGTCACTACCACACCCGTCCTGGTGGAGCCCGTCACTAACGAGGTGCCACTGACTACagcaccctccacccctccctccacacctTTCACTTTCTCCTCCCCTATTGTCATGACAACTGCTGCTAGCCCACCATCCTTTTCCCCGTCTTCTGGATTTACCTTCAGTGCACCTGTAGTGAAAACGGGTCTGTCACTATCCAACGGGAAGATGGTCACCCCAGTAGTGGCAGCAGTGAAGCATGCTGCCAGTGAGAGCATGGAGGAGTTTGAAGGGCCATTTAAACCAGCCAAGATGTTGAAACAGGGCAGTGTGCTGGAGCTCCTCAAAGGACCTGGGTTTGCCGTTCCTGTTACTCAGACCTCTCCTGTCCCCAAAGCCCCCCAGGAGACCCCAGTCATGTCCACTGCCCCCTCCCTTGGGGACTTGTTCAAAGCGCCAACAGGCTCCTGGGACTGTGACGTCTGCATGGTTAGGAACAAACCCACTGCCACAAAGTGTGTGGCCTGTATGACCCCACATCCAAACTCTACTTTAGCGAAGACTGACAGTGAACACTTCACAACGTTGTCCGGGCTGGAGGGTTCCACCACTACTACCGCTGCTGGTTTTGGAGCCCTGTTCACAAAGTCTGCGGGAAGCTGGGACTGTGACACTTGTCTGGTTCAGAACAAGCCTCAAGCAGTCAAATGTGTAGCTTGTGAGACAGCCAAGCCTGGGACTGGAGTTAAAGCCACACTGACTCTGCATGCCTTCTCGGAGGCTAAGACTCTGCCCGCTGCTGCCCCCTTCTTGGGCTTCGGGGACAAGTTTAAGAAGCCGGAGGGAGCGTGGGAGTGTGACATGTGCATGGTGCAGAACAAGGCGCAGGACATCAAGTGTGTTTCCTGTATGAGCACTAAGCCAGGAGTGACGGCAGCGACTCCGTCTCTAACTCCCGCCCCTGTCAGCATCACTCCTCTACTAGGCTTTGGGGCCCAGTTCAAGAAGCCAGATGGAGCGTGGGAGTGTGACGTGTGCTGTGTTCAGAACAAGGGAGTAGACCAGGCGTGTGTGGCCTGTCAGACCCCCAAGCCTGGGGCTTTAGTAGAGCCTAAAGCATTCGGTTCCTCGTCATTTGGTATCCAGTCCTTGTCTGACACCTGCTCAGGGGGATTCAAGTTTGGCATGGGGGTGTCATCGGACTCGGCCTCTGGTTCTGGGGGCTTCAAATTCGGCGGCACCCTCTCTGACTCCTCTTCAGGGGGCTTCAAATTCGGTGCAGCTGCCTCATCAGACACCACCTCAACAGACACCAGCAGCTCTGCAGGCTTCAAATTCGGCAGCTCCACAGAGGGCTTCAAATTTGGAGCATCTACTGCTTCCACCCCTGCAGCGGACGAGGGGAGGAAGGCTGAAGCCCTGAGTATGGGTGCCGGGTTCAAATTTGGCATCAGCGGTGGGATCACGTTCGGCACTACATCAGCTGCTAGCACGGAGAGCAAACCCTCGGACGGAAGGTTCTCCTTTGGACTATCAAAACCGACAACCACCACCTCTACTTTAAGCCTTCCTGTCTCTACAGAGAACGACAGTGGAGCTTCTACCGAAACCACCACAACAGCATCAGCTCCTATTTTTGGGAAGCTGGCTGAGCCTCCTACCCTGGCCACACCACTAGGGGGCAGCATATTTGAGGAATTGCTAGAGAAAGACAAGGACCCTTTCACCTTTGGGAAGCCTGAGAAGGAGGCCTCTATGGGGTCTGGGTTCCTGTTCAGTGCTGCTAGTAAAGGGGCGGAGGCATCGGCTCCCTCTGGAGGCTTTTCCTTCTTTATGGTAGATCCATCTGCAGACCAGCCCAAAGCACCTACCTTCACATTTGGGAAGCTGGCAGACAGCGAGACCCCAGCAGCAAAAGCCCCTAAGCCCTCATTCAGCTTTGGGCAAAGCGCTACAGATGCTGCAGCCTCAAAGCCAGTGTTTGGGTTTAtgtcaaccaccaccacctctacttCCACCACCCCTGCCCCCAGGCTGTTTGGGCCCACCAGCAGCACTACCCCAGCCCCTATCCCAGACCCCAGTACCTTCCTGTTTGGGCAGAGTGCCTCCAGTGAGGCCACCCCAGCCAAGTCCTTCTTGTTTGGGCAGAGCCAGGACAGCCTGCCTGCCCCTGCAGCTTCCCTGAACCCTGGCCCGGCTCAACCATTCCTGTTTGGGTCTGGACCTAACACTGCTGCTCCCTCCTTCGCTTTTGGAGCGGCACCGCTCTCCACTGCCTTAACTACAGCTCCATCAGCAGCCCCTGCTCAGTTTGTATTCAGCCCTGCCTCCTCCTCTGGCTTTGGGTCGGGACAAGCTCCTACCTTTGGTCAGGGTACCTCCCAGCCCAATGCCCCTGCGTTTGGTTCTCCCGCCCCGTCCCCCTTCTCTGCCACGGCCTCCCAGCCCCCAGCCTTCGGGGGGAAGGCCAACTCTGTCCCTGTGTTCGACCACCAAGCCAACTCCACGCCCGCTTTTGGCTCATCCACCCCCGCCGCACCAGGTGGAGGTTTCCAGTTTGGAGGAGTCGGTGCGTTCGGCACGTCCAGTAACAGCACGGGGGTGTTTGCTTTCGGAGGGGTACCAGGAGGGTCCCCCGCCTCTTCTGCCACGCCCTCCATGGCACCCCAACCCAGTGCACCTGGAGGTGGCTTTAACTTTATTGGGTCAACAAAGAGCACCACCTTCACTGCAGCCCCTGCAGGACAGAACTCAATCGCTAGACGCAAGATCAAAACAGCAGTCCGGCGTAAGAAGTAAAACATCCATCGGACTAGACTTGACCCTTTAAGCATAGACAGGACTACTTCCTCTGGACAAACACTGAACTACTTAGCATGTAAAAGAGCTCTGGTGAAGCCCCCATTTGGAGATGTATGGGTGATactctgatggggggggggggtagacccCAGAGCAACTAGAGAGCGGGACCCTTGTACAGAGCAGGTGTCAGGCTTAAAAAATAAACTGCAAATGAACCTACAGTATGATGGCGACAACAACACAATCAAGCGAGAAACTTCTGCTTAACAACACCTCCAAATGTTGGCTAGAACATTGTCGTGACTTTTTGTAATTAAAATACAAATGCAAAAACTGAAATTGAAAGTTGACAGTGTAAAAATCGTACTGTTAAGTTGATTAGTATGGGTGATCAGGTTATGAACTGCGAAAGTTAATGCAGAGATTAAGAACTGTGGTGcgaattccaaatggcaccctactccctatgtagtgaactTTAGTTTAACTTGTGAATTTGAAGCAGTGCACATCATTGGGTcgggaatagggtactatttgaGGCGTAGACAGTGTCAATGGCGTGTAAGCTTACAGTACAGTTTTCTGTGTACTGAATGACGCGTGCTTGTTTTCTGTATACagatttgaggtgtgtgtgtgtaaactggaCGAAAGTGTCGTGTGGTAGTGGCTGGTTGAGGCTGTCGGACAGTTGTAGGTGAGAAGCTTATGAATGTGTTTAAATGGAGGCAGAGGAGAGTGGGGAAGAGAGGACCGTTACCCCAGCACTGTGGAGATTGGGGCTGGAGACCGACTCCTGAAATATCATCCTTAGGACTTTGTAAATCTGTAGTTCCACATTCGTTCACTGTTCTTACTACTTTTTTAATCCCTTTGTCGCTCCATCTCCTTTATTCTCATGTTTTCTCTTGtgccctctttctcttcccttttCTTATTCACGTTCTCTCCCTTCACCACCTCCTGCCGCTCTCTTAATTGGCCTTTGAACATTATAACCTGTAAATAGTAACTTGCTTCTTTTTTTTATCTGTGAAGTTGAATTTGTGTGTTAAACCAACTCTACATTCAGCATTTTGTCATTAGAATTTATTATGTAAATCCCTATATTCAAAGTTGCCTGAAatccattaaaaaaataaatgcataTTGGGATCCTTTGAAGACTAAAGGTATATTGGCATTTCTGATCCACTTTTGTTTGGACCAAAACCAGTATTGTACAAAGTAttagtatatatttttatattgctTGTTTAAATGGACTAGGGTGACTTTGGATAATAAGGTAGTCGATTTAATTTTAAAGCCATGATTGTTACTGGATTAGTAATAAAAATAAGATCCATGGGTAATTGCCGTCAATAAAACTATAATATGTAATTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793856 lncRNA downstream 1706 58822179 ~ 58822505 (-) True G1567865
TU1793296 lncRNA downstream 81369 58739765 ~ 58742842 (-) True LOC110496609
TU1793237 lncRNA downstream 129389 58693972 ~ 58694822 (-) True G1567380
TU1793225 lncRNA downstream 161324 58662613 ~ 58662887 (-) True G1567368
TU1793210 lncRNA downstream 235229 58588360 ~ 58588982 (-) True G1567353
TU1793863 lncRNA upstream 19315 58871856 ~ 58872355 (-) True G1567871
TU1793878 lncRNA upstream 33367 58885908 ~ 58892166 (-) True G1567880
TU1793885 lncRNA upstream 58948 58911489 ~ 58911850 (-) True G1567886
TU1793891 lncRNA upstream 75323 58927864 ~ 58932641 (-) False G1567889
TU1793892 lncRNA upstream 75323 58927864 ~ 58932582 (-) False G1567889
XM_036953381.1 mRNA downstream 15639 58793299 ~ 58808572 (-) True rbm24a
XM_036953360.1 mRNA downstream 35197 58740339 ~ 58789014 (-) False LOC110496609
XM_021572603.2 mRNA downstream 35198 58740339 ~ 58789013 (-) False LOC110496609
XM_021572607.2 mRNA downstream 86943 58725463 ~ 58737268 (-) True LOC110496611
XM_036953355.1 mRNA downstream 100453 58708720 ~ 58723758 (-) True LOC110496607
XM_021572611.2 mRNA upstream 1740 58854281 ~ 58863742 (-) True ptdss1b
XM_021572612.2 mRNA upstream 21154 58873695 ~ 58876891 (-) True LOC110496616
XM_021572614.2 mRNA upstream 25305 58877846 ~ 58906171 (-) False LOC110496617
XM_036953392.1 mRNA upstream 25306 58877847 ~ 58906171 (-) True LOC110496617
XM_021572618.2 mRNA upstream 62620 58915161 ~ 58918050 (-) True LOC110496620
TU1792861 other downstream 413082 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 656514 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 746065 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 796421 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 2086864 56728352 ~ 56737347 (-) True LOC110496560
TU1793871 other upstream 16822 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 18396 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 152304 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 302487 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 876638 59729179 ~ 59736780 (-) True LOC110496637

Expression Profile