RNA id: XM_021572611.2


Basic Information

Item Value
RNA id XM_021572611.2
length 2406
RNA type mRNA
GC content 0.45
exon number 13
gene id ptdss1b
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58854281 ~ 58863742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCGCCCATCCCCAGTCCTCATCAATTTATTTACAGGCAGATCAACCTGTCCTGTCGAGAACTGCTGACACAGGGAATTTTGTGGAAGAAACTCCTTATCACTCAACCATGGCGCCTGCTTTGGGATCCCATAAATTAAGCACGGATGATGTGAATGACATGTTACACTTTCGGATGATTAACGAGCAACAAGTGGAGGGCATCAGCATTAACTTTTTCTACAAGCCTCACACTCTCACGCTTTTGACGTTCACTGTGGCTAGCTTGATGTACTTCGTCTTTTCCAGGGATGATGCAGATGTTGACAACAACCTTCGAGTGGGTTTCCTGTTGGTTGTCTCCTTCTTCCTCGTCATCAGTGTCCTGGCCTTCCCCAATGGTCCATTCACAAGACCACATCCTGCAATTTGGCGCATGGTATTTGGTCTGAGTGTTCTGTACTTCCTGTTCCTGGTCTTCCTCATCTTCCTGAACTGGGCCCAGGTGAAGAGGCTCATGTACTGGGTGGACCCCAACCTACGCTACGCTACCCGTGAGACTGATGTCATGGAATATGCAGTGAACTGTCACGTGATCACCTGGGAGCGGATCCTGAGCCACTTTGACATCTTTGCGTTTGGGCATTTCGGGGGCTGGGCCATGAAGGCAATGCTCATCCGCAGCTACGCCCTCTGCTGGACCATCAGCATCACCTGGGAGCTCACTGAGctgTTCTTCATGCACCTGCTGCCTAACTTTGCTGAGTGCTGGTGGGACCAGTTGATCCTGGACATCCTCCTGTGTAATGGAGGGGGCATCTGGTTGGGCATGACTGTGTGTCGCTTCCTGGAGATGCGGACCTACCAATGGGCCAGCATCAAAGACATCCACACGACCACAGGGAAGCTGAAGCGGGTTGTGCTCCAGTTCACCCCAGCAAGCTGGACCTACGTACGATGGTTAGACCCCAAGTCCTCCTTCCAGAGGGTGGCAGGGATCTACGTCTTTATGATTCTCTGGCAGCTGACTGAGTTGAACACGTTCTTCCTGAAGCACATCTTCGTGTTCCAGGCATCTCACGCTCTCAGCTGGTGCCGGATTCTCCTTCTTGGAATCATCACAGCCCCTACTGTACGACAGTATTATGCATATCTGACAGACACACAGTGCAAACGAGTGGGAACACAATGCTGGATGTTTGGGGCCATAGCCTTCCTGGAGGCCCTGGCGTGTGTCAAGTTTGGACAGGACGTGTTCTCTAAAACACAAGCTCGGTCTGTGTTCCAGTGGCTTCTGTGTGTGgcttTCATCACACTTCTCTGTCTGTATGGGATGGTGCGGTATGAGCAGAAGTATGAGCCTGAGTTAAAGAGTGTCTCTGAGAGTGATGATGGCAACCTAATAGAGTCATGTGATTATGACATTACAGGTGAGAGAGACTCTCGGAATAACTCAGCCAGTCCATCTAAACAAGGGAGAGGCTCTGCGAGAACCAAAGCTGTCAATGGACACGAAGATTAAAAGCAATGAGAGCCAATGAAGGGACTACGGTACATCCCTACTGCACCCAACAACTCTGTGGGGAGATGGAAGGAAGAGAATTTGGGTAAGGAGGTTCAAGAGGTGGGGATATTACATTGGTTGAAAGGTGGTTAAAGAACATTGATGAGATAAATGAAGCATAAACTGGAGAAGGCTGAGCAGAGAGCTTTACTACATTTAcattagtaatttagcagacgctcttacccaGAGCAACCCCCCACTTCACTGTGTTTGTGAGATCAACAACCAATCAACAAAAGTTGAATTTACCACTTGATGAGGAGGCACCAACTGTTGAGTTTACAATCTTCACAGAATTGACTGAACACCAAGGTGTACCGAATGCATTTTTACTCTTCACACTCTTCCCCCTCTTGTTCAAATGATGACCATAAATATTACAGGATGGATTTTATTTAACTTACAATGAAAATCTAAATTATGTGAAGCTAAAGCCTGAATGTTTTAGATGCCTGGTTTCCCTTTTCTGTATTCAGAGTTTATTATTGCTAATTATTTTAACTCATTCAGTTCAAGCTATATATATTGAAAGTCAGAGTTCACATTTTTCTATGAGAATTTCAAAgataatttaaatacattttacaactgactagtaTTGAAATGGAATTGGTCTCAACCCTGTTTGGACAGATCTGTTTTTAAGATAATTCCAGGCCTTAAatgtttaaaatgttgattatgTCATGACGACTCACTTTGTTTAAGTGAGTGTGTGAAAGGTAATATGATTAACCATTGTTTTTATACAAGCATTAAGAGTGCATTTGTTTTGTATGAATTATGTGAACTGCACACTGTTACAAGATCATTTATATGAATATAGCTTTCtaataaatatttaaaacaggacaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793856 lncRNA downstream 31776 58822179 ~ 58822505 (-) True G1567865
TU1793296 lncRNA downstream 111439 58739765 ~ 58742842 (-) True LOC110496609
TU1793237 lncRNA downstream 159459 58693972 ~ 58694822 (-) True G1567380
TU1793225 lncRNA downstream 191394 58662613 ~ 58662887 (-) True G1567368
TU1793210 lncRNA downstream 265299 58588360 ~ 58588982 (-) True G1567353
TU1793863 lncRNA upstream 8114 58871856 ~ 58872355 (-) True G1567871
TU1793878 lncRNA upstream 22166 58885908 ~ 58892166 (-) True G1567880
TU1793885 lncRNA upstream 47747 58911489 ~ 58911850 (-) True G1567886
TU1793891 lncRNA upstream 64122 58927864 ~ 58932641 (-) False G1567889
TU1793892 lncRNA upstream 64122 58927864 ~ 58932582 (-) False G1567889
XM_021572609.2 mRNA downstream 1740 58824211 ~ 58852541 (-) False LOC110496613
XM_036953389.1 mRNA downstream 1740 58824211 ~ 58852541 (-) False LOC110496613
XM_036953391.1 mRNA downstream 1740 58829924 ~ 58852541 (-) True LOC110496613
XM_021572610.2 mRNA downstream 1757 58824211 ~ 58852524 (-) False LOC110496613
XM_036953390.1 mRNA downstream 1757 58824211 ~ 58852524 (-) False LOC110496613
XM_021572612.2 mRNA upstream 9953 58873695 ~ 58876891 (-) True LOC110496616
XM_021572614.2 mRNA upstream 14104 58877846 ~ 58906171 (-) False LOC110496617
XM_036953392.1 mRNA upstream 14105 58877847 ~ 58906171 (-) True LOC110496617
XM_021572618.2 mRNA upstream 51419 58915161 ~ 58918050 (-) True LOC110496620
XM_036953394.1 mRNA upstream 58286 58922028 ~ 58926488 (-) True si:ch211-57n23.1
TU1792861 other downstream 443152 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 686584 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 776135 58075623 ~ 58078146 (-) True G1566923
TU1792637 other downstream 826491 58027511 ~ 58027790 (-) True G1566899
TU1790882 other downstream 2116934 56728352 ~ 56737347 (-) True LOC110496560
TU1793871 other upstream 5621 58869363 ~ 58870007 (-) True G1567875
TU1793867 other upstream 7195 58870937 ~ 58873691 (-) False G1567871
TU1793943 other upstream 141103 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 291286 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 865437 59729179 ~ 59736780 (-) True LOC110496637

Expression Profile