RNA id: XM_021572614.2


Basic Information

Item Value
RNA id XM_021572614.2
length 2135
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110496617
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58877846 ~ 58906171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTCCATATTGCGAGCACTTTCCCAAAGCTTCGGTCCTCTTGTTTACCTCAACCAACTTTAGCCGATCTCAACCCTCGAATAACTTGATAGGAAAATGGATATATCGGTGCATACAGGATATAACTGTCTTTGTTGTTATCAATGGGAGATGATGAAGATGTCTTGGTCAATTCGCAAATAGATGAAGGTTCAAGGCACAAGAGGAAATACCACAAAATATGGGCAAACTCCAATCAAAACATGGAGTTGTGCAGAAGGGAAGTGAAGGAAGAGCAGGTCCTGGACCATAAGTGCCCCCTACAGGTGGTACTGCcaccagaggagagggagagctccATCCACGTTCCATTCAGACAGCCCAGGAAGAGAAACAGTCATGTTGACGACACAGAGTGCACCGTGGTGTTGGAGGATGACACTCGGCAAGAGAGGGTTTTTACACTGTATCACTTTGACAACAGCGGTAAAGTCACCAAGCAGGATATGTGCAGTCTCATGCAGTCCATCTATGAGGTGGTTGAAGCGTCGGCCAAGCAGCCGTCCTGTAGCAGCACAGCCCTGAAGGTCAAACTGGTGGTAGGCCCCTCCAGTAGCTCTGGCCGGGGCTCTAGAACAGGTGACAGAATGGAGGTCCAGCAGGAGGAGGCTGGGAGCCCAGAGAGGATTTTTCACTGTGTGGATGAAAACACAGAACGCAGGAACCACTACTTAGACCTAGCTGGGATAGAGAACTATTCCTCAAAGTTTGACAATGCAGACGCCCCCTCTCAGGAGCCCAGAGTGGACGCACGCTCAGACCAGCAGCACCGCTCAGTGTTGGTAGGGGAGAACTGCGGCGCAACTGAGTCCAGAGGTAGGGGCCTCTCCTTCAATAGGTCTCTCAGGGGCCACGTCAAGGCAGtgggaagagacagaggaggtggaggaggaggagggggaggaggacgtGGGGGAAAATCAAGCAAGCTCCATGGCCACCAGCCCTTCATGTGGTGCCACTCCTCCCAGCCACACTTCCAGCCCCAACTCCCCTTACAGCACAGCCACAGTAAGAGGCTTCGCTCCAGGGCCAGAGAAGCTGGGTCCCCCTCCAGAACCCTCCACCACCTACACCAGCCTGCTTCTCAAGCTcagccagggggagagagggagatgctgcCCAGCCTGCCTGCCTTGTCTGGGGGCTTGGTCTCCCTGGCTCAGAGGCATGAGCACCACCACgagcaccatcaccaccaccaccaccatcactaccactaccaccccccGACATGACTGCAGTCTGCACTCCACTCAGGGATACAGAGACTGAGAGAAACACCTCCCTGTGGTTTAGCCCATAGCTAGGGCCCTGAGCCATTCCTGGTCAGGTCAGGTGGGCCTTAGATATAGTATAGGGCTGTGGGACACCACCACTCTCCATGCTAAGGAGTAATAGCAACTCCGTACAAAATTGAACTGTTATGCCTTGTATTGATAACTGAGTTTCATGTTGAATGTGCCATGTTGAATATGCTACTCACCTTTGGAAGCCCTCTAAACTGAtgtttcttctcaggtttttatagtggaggctgctgagggtagaacagctcataataatggccggaatggagcaaatggaacggAAACCATGTGttatatttgataccattccactgaatCCGCTCCAGTTATTACCttaagcccgttctccccaattaaggtgccaccaacctcctgtgattacAACTTACATTTAATATAATTAATGAATACCTTCATTAAGGCAAATATTTAATCAGTTACATCCCTGTATTAGAGTTTATGcagtatgttttgtattgtttgtattttGATGTATTAAAGCATGATCAACTTTGCTTGTGTTCATTGTAGTGTGTCAATTGAAAAATACACACTCTCTAATGAAGGCTGATGCTTTCAAATTTGGCAATAtgaaaaatctaaataaaataaacatttgcaAGAAACAATAAAATAATACACACTGTTTACGGCGTGTGGAAGTTGTCAAATGTGTTTCTCTCTCATGGCCAAAGCAAAACATTACATGCTAAGGCTCTAATACTTGTCATCAAAGTATTTGGAACACTGGAGGTTCCAGTGTTAGAACACTATGGAGGTTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793863 lncRNA downstream 5491 58871856 ~ 58872355 (-) True G1567871
TU1793856 lncRNA downstream 55341 58822179 ~ 58822505 (-) True G1567865
TU1793296 lncRNA downstream 135004 58739765 ~ 58742842 (-) True LOC110496609
TU1793237 lncRNA downstream 183024 58693972 ~ 58694822 (-) True G1567380
TU1793225 lncRNA downstream 214959 58662613 ~ 58662887 (-) True G1567368
TU1793885 lncRNA upstream 5318 58911489 ~ 58911850 (-) True G1567886
TU1793891 lncRNA upstream 21693 58927864 ~ 58932641 (-) False G1567889
TU1793892 lncRNA upstream 21693 58927864 ~ 58932582 (-) False G1567889
TU1793893 lncRNA upstream 23026 58929197 ~ 58932582 (-) True G1567889
TU1793923 lncRNA upstream 72089 58978260 ~ 58978474 (-) True G1567913
XM_021572612.2 mRNA downstream 955 58873695 ~ 58876891 (-) True LOC110496616
XM_021572611.2 mRNA downstream 14104 58854281 ~ 58863742 (-) True ptdss1b
XM_021572609.2 mRNA downstream 25305 58824211 ~ 58852541 (-) False LOC110496613
XM_036953389.1 mRNA downstream 25305 58824211 ~ 58852541 (-) False LOC110496613
XM_036953391.1 mRNA downstream 25305 58829924 ~ 58852541 (-) True LOC110496613
XM_021572618.2 mRNA upstream 8990 58915161 ~ 58918050 (-) True LOC110496620
XM_036953394.1 mRNA upstream 15857 58922028 ~ 58926488 (-) True si:ch211-57n23.1
XM_021572622.2 mRNA upstream 28097 58934268 ~ 58952492 (-) False ago2
XM_021572623.2 mRNA upstream 28097 58934268 ~ 58952492 (-) False ago2
XM_021572624.2 mRNA upstream 28097 58934268 ~ 58952492 (-) False ago2
TU1793867 other downstream 4155 58870937 ~ 58873691 (-) False G1567871
TU1793871 other downstream 7839 58869363 ~ 58870007 (-) True G1567875
TU1792861 other downstream 466717 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 710149 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 799700 58075623 ~ 58078146 (-) True G1566923
TU1793943 other upstream 98674 59004845 ~ 59074648 (-) True G1567931
TU1794038 other upstream 248857 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 823008 59729179 ~ 59736780 (-) True LOC110496637
TU1795401 other upstream 1335760 60241931 ~ 60251369 (-) True G1569198
TU1795466 other upstream 1442605 60348776 ~ 60350759 (-) True G1569258

Expression Profile