RNA id: XM_021572630.2


Basic Information

Item Value
RNA id XM_021572630.2
length 1814
RNA type mRNA
GC content 0.45
exon number 3
gene id dlx5a
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58957121 ~ 58959671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCGTAAGAGCGCAATTTAGGATTTAACCAGGTCTTTGCTGTGGAGCTGGCAGCAGTTCGAGAGAGCCCGTCGGCGAAAGCACACATCACACAATGCAAGTGTAGTCTTCACTCAGTCTTCATACGTCTCAGTGGAAACAGACTTCCCTTTAACGTTGCTGCTTCGCACTATGACTGGAGTATTCGACCGAAGGATTCCGAGTATCAAACCTGCCGACTTCCAGAACCCTTTTCAGCTTTCCACCACAATGCATCACCCGTCTCAGGAATCTCCTACGCTGCCCGAGTCTACGGCCACGGATTCTGGCTACTACAGCCCTGCTGGAGCAGTGCACCATGGCTATTGTTCGCCTAACTCCACCTCATATGGGAAACCGCTCAATGCCTATCAGTACCAGTACCACGGCGTAAACGGATCTGCGGGAAATTACCCTGCAAAAACATACCCAGACTACAGCGCATACACAGCCTCTGCTTACCACCAATATGCTGGAACTTATAGCAGAGTACAACCACAACCATTAAGTCCGCAAGaAAAAGAGGTAGCAGAACCTGAAGTGAGGATGGTAAACGGAAAGCCCAAGAAAATCAGAAAACCAAGAACAATCTACTCCAGTTTTCAGCTCGCCGCCCTGCAGCGGAGATTTCAGAACACACAGTACCTCGCGCTGCCTGAGAGAGCAGAGCTTGCGGCTTCGTTGGGACTCACGCAAACGCAGGTCAAAATATGGTTCCAGAACAAAAGGTCGAAACTGAAGAAAATCATGAAGAATGGCGAACTCCCACCGGAACACAGCCCGAGCTCCAGCGATCCCATGGCTTGCAACTCTCCTCATTCACCCGCCGTCTGGGACACGCAGGGCCCGTCCAGGCCTCACAGCCACCAGGCACAGAACAACAACTCCGCGGCATCAACCTTTTTGGAAAACTCCGCCTCTTGGTACTCCGCGGCTGGTTCCATGAATTCTCACCTCCAGACCCCCAACTCGATACAGCACTCTTTGGTTCTCGGATCGGGGACGTTATACTGAAACCCAGTTCAACAAATATTTCATTGTATGGGACTCGTGTTTAAAAGATTCAGAGGAATATGCAATGTATTGATGACAGTCATAGAAGAACGTGTATAATGTGTAAATGTGTGCATGTAATTTATTGCATTTTGGAAGACTAATTAAACGTTTTAAATGGACAATGGAACCCAGACACTTTCAATGGCGCCCTCCTGAATTAACACTTTAAGGCAATTGTTTTGCTGATACCCACAAATCCCTCATAATTACTGATATAGCATGTAGGCCTAGATAGGCTATTCGCACTGAATATCAAGGACTCCATAACATAACAACATAAGCCTACTTTCTGTGAGACACTTTAAATCCATGTACAGCTCAAACTCGAGTTTAATTGCCTGGACTGCCTGTGTGCCCATATTTGGTCAGTGGTGCAAAGTAGTGATTCACTTTAAATAATAATTTGGCCACACATCTATCAACAAGGAGATGGGTCTAATGACCTTGGGCTAAACAGTTAGGCTGTTTCATTTTCAACAACCACGGAATTCTCAGGGGGAGTTACCTTCAGGTATCTCAAAAGATTAGGCTAGATTTATTTCGTGTCATGTCAAGTTATTCATTTGAAAACTACAACCTGTTTTATGGTTATGTGCATATAAACATGCCCATAGTAAATAGTTTTCAGCGGATCCATAACCGACTAAACAGAACCTATATCGAAGAGATCATTGAGTGtataataattaacatttttGAAGAGTGTGTTTTGAATTACAATTGAATTTGGAATGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793387 lncRNA upstream 26922 58929573 ~ 58930215 (+) True G1567503
TU1793389 lncRNA upstream 31585 58924301 ~ 58925552 (+) True G1567505
TU1793406 lncRNA upstream 54646 58890403 ~ 58902491 (+) True G1567522
TU1793400 lncRNA upstream 79677 58877027 ~ 58877460 (+) True G1567516
TU1793399 lncRNA upstream 87127 58869481 ~ 58870010 (+) True G1567515
TU1793442 lncRNA downstream 1571 58961242 ~ 58976415 (+) True G1567543
TU1793454 lncRNA downstream 28377 58988048 ~ 58988650 (+) True G1567555
TU1793582 lncRNA downstream 229782 59189453 ~ 59189762 (+) True G1567653
TU1793645 lncRNA downstream 361670 59321341 ~ 59322412 (+) True G1567707
TU1793713 lncRNA downstream 464564 59424235 ~ 59424987 (+) True G1567764
trnaa-ugc-140 mRNA upstream 11803 58945261 ~ 58945334 (+) True trnaa-ugc-140
NM_001165203.1 mRNA upstream 35118 58918319 ~ 58922019 (+) True chrc1
XM_036953393.1 mRNA upstream 41738 58906505 ~ 58915399 (+) True LOC110496619
XM_021572616.2 mRNA upstream 83445 58870847 ~ 58873692 (+) False LOC110496618
XM_021572615.2 mRNA upstream 83447 58864013 ~ 58873690 (+) False LOC110496618
XM_021572632.2 mRNA downstream 65248 59024919 ~ 59035388 (+) False sem1
XM_036953396.1 mRNA downstream 98855 59058526 ~ 59156295 (+) True LOC110496872
XM_021572634.2 mRNA downstream 323989 59283660 ~ 59298606 (+) True pdk4
XM_021572642.2 mRNA downstream 480105 59439776 ~ 59472172 (+) False sgce
XM_021572643.2 mRNA downstream 480105 59439776 ~ 59472172 (+) False sgce
TU1793356 other upstream 83447 58870899 ~ 58873690 (+) True LOC110496618
TU1792104 other upstream 580131 58364256 ~ 58377006 (+) True G1566445
TU1791846 other upstream 1010374 57941097 ~ 57946763 (+) True G1566224
TU1791842 other upstream 1036491 57916615 ~ 57920646 (+) True LOC110496592
TU1791820 other upstream 1094091 57851221 ~ 57863046 (+) True LOC110496591
TU1793473 other downstream 65309 59024980 ~ 59035335 (+) True sem1
TU1793654 other downstream 350313 59309984 ~ 59312723 (+) True G1567716
TU1793780 other downstream 541502 59501173 ~ 59585317 (+) True G1567804
TU1794295 other downstream 685042 59644713 ~ 59647881 (+) True LOC110496636
TU1794357 other downstream 792580 59752251 ~ 59753551 (+) True LOC110496635

Expression Profile