RNA id: LOC110496627


Basic Information

Item Value
RNA id LOC110496627
length 569
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC110496627
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59060343 ~ 59060911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCCACTGCTGAAATGGCCTCTTCCTGCGGAGATATACTGGTTAAGGAGATTGACAAACGTGCGTCTGGCTAGGTGTTCGAGGTGATCCTAGGAGCTCCAGCTCCAGACGCCAAGGGAGagttccccctttctccccccaaGAAGAAGGACCTGTCCCTGGAGGAGATCCAGAGGAAACTAGAggctgcagaggagaggaggaagtccCATGAAGCGGAGGTTCTGAAACACCTCACTGAGAAGCGGGAGCACGAGAAGGAGGTGCAAAGGAAAGCCATGGAGGAGAACAACAACTTCAGCAAGATAGCAGAGGAGAAGCTTAACCAGAAGATGGAGGCTAACAAAGAAAACTAGGAGGCCCTTCAGGCAGCCATGAGTGAGAAGTTCAAGGAGAAGGACAAGAAACTGGAAGAGGTGCATGCTAAGAAGGAAACCAAAGAGGGCGGTGCCGAGACATCAACAAACTGAACAGTTCAGTCTATGGGGGAATTGTATACTATAGGGTTTTTTACGTATCCAAAGATTGATTTATATTTAGTTGATGGCCAGTATTAATGTTCCCTGCC

Function

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1793957 lncRNA downstream 25005 59025022 ~ 59035338 (-) True G1567944
TU1793923 lncRNA downstream 81869 58978260 ~ 58978474 (-) True G1567913
TU1793891 lncRNA downstream 127702 58927864 ~ 58932641 (-) False G1567889
TU1793892 lncRNA downstream 127761 58927864 ~ 58932582 (-) False G1567889
TU1793893 lncRNA downstream 127761 58929197 ~ 58932582 (-) True G1567889
TU1793992 lncRNA upstream 29098 59090009 ~ 59090699 (-) True G1567979
TU1794047 lncRNA upstream 107036 59167947 ~ 59168189 (-) True G1568021
TU1794053 lncRNA upstream 119187 59180098 ~ 59180748 (-) True G1568027
TU1794066 lncRNA upstream 133988 59194899 ~ 59273220 (-) True G1568035
TU1794163 lncRNA upstream 308664 59369575 ~ 59371107 (-) True G1568121
XM_021572631.2 mRNA downstream 94212 58962944 ~ 58966131 (-) True dlx6a
XM_021572624.2 mRNA downstream 107851 58934268 ~ 58952492 (-) False ago2
XM_036951073.1 mRNA upstream 102663 59163574 ~ 59281264 (-) True LOC118940999
XM_036953399.1 mRNA upstream 233326 59294237 ~ 59320224 (-) False asb4
XM_036953400.1 mRNA upstream 233326 59294237 ~ 59320224 (-) False asb4
XM_036953397.1 mRNA upstream 247453 59308364 ~ 59320224 (-) True asb4
XM_036953401.1 mRNA upstream 261713 59322624 ~ 59438072 (-) False ppp1r9a
TU1793867 other downstream 186652 58870937 ~ 58873691 (-) False G1567871
TU1793871 other downstream 190336 58869363 ~ 58870007 (-) True G1567875
TU1792861 other downstream 649214 58410499 ~ 58411129 (-) True G1567080
TU1792723 other downstream 892646 58167384 ~ 58167697 (-) True G1566972
TU1792666 other downstream 982197 58075623 ~ 58078146 (-) True G1566923
TU1794038 other upstream 94117 59155028 ~ 59157044 (-) True G1568017
TU1794475 other upstream 668268 59729179 ~ 59736780 (-) True LOC110496637
TU1795401 other upstream 1181020 60241931 ~ 60251369 (-) True G1569198
TU1795466 other upstream 1287865 60348776 ~ 60350759 (-) True G1569258
TU1795498 other upstream 1318942 60379853 ~ 60389092 (-) True G1569277

Expression Profile