RNA id: XM_036953419.1


Basic Information

Item Value
RNA id XM_036953419.1
length 2876
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110496642
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59906906 ~ 59932090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtatccccccctttcctttctctctctctctgtctctctttcagtctctctgtctccctgttatCGCAAAGTGAATGTGTCTGTCCCCTTCTCTGAGTATCTGTGGTCTAACTCTCCGCTCTCTGTGTGTGGGCGGAAGGAGCAAGTCAAGCTAactattccctctctctgtccccctgttaTAGGAGTCTCTGGGGGAAGGCGGAGCCAGCATCCAGGGTGGCccggtggaggagaggaaggagaaggtgCCCAGCCCTCACCTCAGCCAGCTGGTTGTTCTGACAGCCAGTGAGACACTCTACGGCCTGGCCCAGAGGCTGGTCGCAACAGAGTCACTGGTGTTTCTGGCCGAGCAGTTTGGGTCCCTTCAGTCTCACCTGGATACTATGATGCCTGCAGCCAAGAAGCCGTTCCTCCAGCAGTTCTACTCACAGACTGTCTCCACGGCCAGTGAGCTACGTAAACCCATATGCTGGGTCGTGGCGGCCAAGGCTTTAGACTACGAACAGATGCTGCTGCTGATGGCTGCAGTTAAGTGGGACATTAGGGAGATAATGTCGCAGCACAATGTGTACGTGGACGTCCTGTTAAAGGAGTTTGAGGAGTTTAACAAGAGGCTGGGTGATGTGTCCAGACACGTCCGGGTCCCTCTGCCTGTGTCTAACGTCCTGTGGGAACACTGCATCCGTCTGGCCAACAGGACTCTGGTGGAGGGCTATGGTAATGTAAAGAAGTGCAGTACTGATGGGCGGCCTCTGATGCAGCTGGACTTCCAGCAGTTCCTGATGAAGCTGGAGAAGCTGACAGACATGAGGCCCATCCCTGACTGAGAATGACATGGAGCAGTTCATCAAGAACCACAGGGAGTACTCCATGAAGCAGCTGGCCAACCTGGTGCACGTGTGTCTGGGCTCTCACATAAACAAGAAGGCCTGGCATAAACTCCTGGCAGCCATCGACGACATCGACAGACCAAagcgatagagacagacaggcatggTTATTGTATTTAAGGTGGCTTCTAAACATGAGGCTCAATTTTAGAATGCCGAGGGTTAGAATCCTCACAAACCCAACAGGAACAGAAAAGAAGCAATGAAACAAGAACTTCTGCTTATAAATACACTCATACAAGCATGTTTCAGTTATCTGACTAACTCACTACATATAGGCTACAATTCTACATGCCCCTCGTGGATATCCAATATCCACAAACATGCTGCTTACAGTTTCACTGTGTTTTGTAAGTTACCACAGAGATGCTCCATTCTCCTGTTCATCGTGAATAGAGTGTACATGTTTATGAGGAAGGACTCTGGGTTTTTAAGATAAACTACTTGAAATGCTGAATGATACTCCATGACGTTTTATTTTTCTCCTACTGTTTGTCTATAGCATAATGTGCTTCTGTAAACAGCTCAGGAGCAACGTTGACCCTGGGGAAAAACTGAATCGTTTAACATTTTCTTTTTGACTATAATGTGACAGATATGGCTGAGTTGAGAAAACAGACACTTTTCCATAGAAATCCAGATAGTGTATTTCTCCAGGTATAACATGCACTCACAAACACAGTTTCTGAAAAAGCATGGTATGTTAATTGAAGTACTTCCCTTTCAGGTTACGCCTATGGAGACATCTGGTCTAGTGCCCTTTAAATGTCCAttaatgatgttgatgatgatgatgacagcactgtttttttgtgttgttCCAGTGGTGTGGGATGAAGTCACCCCAGACACTGAGCTTCGGTCAGTTTTGCgtttcccccactaatggttaaggttaggattgggggagcgaaagctgatcctagatctgtacctaagggTATCTTCACCCCTGAGCTTGTTCCAGTCCAGGACTATTACTGTACCTGGGCTGTTTGTTATGTCCAAAAATGATTTATCCTGATACACCAAGTTAAAATTATATGTTGTCATCTTGTCTCTAATAAAATGTTCTGTtttacactgagtgcacaaaacattatgaacacctgctctttccatgacatagactgaccaggtgaaagctatgatcacttgttaaatacacttcaatcagtgtagatgaaggggaggagacaggttaaataaaacaattcagacatggattgtgtatgtgtgccattcagagggggaatgggcaagACTTTGCtcggtttttcatgctcaacagtttcctgtgtgtatcaagaatggtccaccacccaaaggacttccagccaacttgacacaactgtaggaagcattggagttaaaatgtgccagcatccctgtggaacgcttcaacaccttgtagagtccataacCATTCAATATGTTCAAAGTTAacattatacacagtgtacaaaacattaaaggCACCTTCCTAATCTTGAGTTTGCCTTTTTTAAGGGCCAAAGGCGGTATGCAActctgcaactcaatattaggaaggtgtctttaatgttttgtacactgggTATAATGTTGATTTTGAACATATTGAATGGTTATAGATGATATACTAGGTCTAACGTGCATCCGCTGCACTGGTTTAGTTCCTAGTCATATCATAAGAAGGAGTTTAATTGTCCAAACACACAACCTCCACCATTGTCTCTGCATCTCTCCTTGTGATAAGATGAGGAAAAATAGTAGTTTTTGACACCGAAACAACGTAaatgattcaatagttttttgtTGCATTACGGTTCCAAGATGATAATGTAAATGTGTAAAACATACGTTTTATTTCTGTTGTGTCACTTTGGATTCCAGACTTTTTATACACGATAAGTACTGGAAGTGTGCTATCTGTTTACTGGCGGTACGCTGTATCTGGTTGTCAaatgtaaaataatataaaataaactacattatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1794660 lncRNA downstream 4933 59901693 ~ 59901973 (-) True G1568565
TU1794648 lncRNA downstream 13068 59893588 ~ 59893838 (-) True G1568553
TU1794647 lncRNA downstream 13444 59893230 ~ 59893462 (-) True G1568552
TU1794646 lncRNA downstream 14386 59892021 ~ 59892520 (-) True G1568551
TU1794628 lncRNA downstream 25235 59881450 ~ 59881671 (-) True G1568534
TU1794906 lncRNA upstream 25404 59957494 ~ 59957784 (-) True G1568767
TU1794922 lncRNA upstream 49275 59981365 ~ 59981592 (-) True G1568783
TU1794935 lncRNA upstream 88505 60020595 ~ 60021868 (-) False G1568793
TU1794936 lncRNA upstream 88923 60021013 ~ 60021566 (-) False G1568793
TU1794934 lncRNA upstream 89190 60021280 ~ 60021868 (-) True G1568793
XR_005037526.1 mRNA downstream 168313 59719440 ~ 59738593 (-) False LOC110496637
XM_021572653.2 mRNA downstream 168317 59737270 ~ 59738589 (-) False LOC110496637
XM_036953414.1 mRNA downstream 170093 59723043 ~ 59736813 (-) False LOC110496637
XM_036953415.1 mRNA downstream 170094 59721805 ~ 59736812 (-) False LOC110496637
XM_036953417.1 mRNA downstream 170095 59712624 ~ 59736811 (-) False LOC110496637
LOC110496641 mRNA upstream 86544 60018634 ~ 60200542 (-) False LOC110496641
XM_036953421.1 mRNA upstream 269858 60201948 ~ 60254722 (-) False LOC110496644
XM_036953420.1 mRNA upstream 269858 60201948 ~ 60254724 (-) True LOC110496644
XR_002469584.2 mRNA upstream 440428 60372518 ~ 60374869 (-) False LOC110496648
XR_002469583.2 mRNA upstream 440428 60372518 ~ 60374871 (-) False LOC110496648
TU1794475 other downstream 170126 59729179 ~ 59736780 (-) True LOC110496637
TU1794038 other downstream 749862 59155028 ~ 59157044 (-) True G1568017
TU1793943 other downstream 832258 59004845 ~ 59074648 (-) True G1567931
TU1793867 other downstream 1033215 58870937 ~ 58873691 (-) False G1567871
TU1793871 other downstream 1036899 58869363 ~ 58870007 (-) True G1567875
TU1795401 other upstream 309841 60241931 ~ 60251369 (-) True G1569198
TU1795466 other upstream 416686 60348776 ~ 60350759 (-) True G1569258
TU1795498 other upstream 447763 60379853 ~ 60389092 (-) True G1569277
TU1795654 other upstream 678397 60610487 ~ 60616016 (-) False LOC110496651
TU1795648 other upstream 679702 60611792 ~ 60616292 (-) False LOC110496651

Expression Profile