RNA id: XR_002469583.2


Basic Information

Item Value
RNA id XR_002469583.2
length 1005
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110496648
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60372518 ~ 60374871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTACTTCGGGTTTGGGTTTTGTTGTCATTAGCAAACATGGCGGCGCCCATCAACAGCTGAAGTTGGAGCACTCCAGAGGTTTATAAACACCATGAGCAACACAATGTGTGCCCCTCGCGAACAAATTATAGAAAATGAAGAAGACCTAAAGAAGTTAAGGTGTACACCATCAACTTGGAGTCTCATTACCTGGCAGTGTAAGAAGCCCCAGCCATTGGGGTGATGACAGAACTAATCCAGCTCTCTGCGCTGTACAGGTTTGTGTAGAAGGGCTGGATGATGACCCTGCAGAGGAATTCAGAGGTCTACCTCATCAAGTTCCAGAAACTCACCAGTGCAAGGGCAGCCAAAAGGCACATGGATGAGAAGAGTTTCTTTGGAGGTTTACTACATGTGCTATGCCCCAGAGTATGAGACAGTGGAGAACACCAGATTAAAGCTGCAAGACGGAAGATATGTGAATAGGACGGCTCAAAATAAAGAACAGGACCAGGGGGATGAAGAGAAAAAAGCCCATGTCTTCAGATACATTTGCTACCACAGCCAGGACTTCTTAAGGTAGCATCAGTTCCTGAAGTCAAGCCAACAGAGAAGAAGACAAAGCCAGGAAAGCCTCGGAAGATAATCTAACAGGGAAAAGGAAAgggtgatacctagtcagttgtccaactgaatgtattcaactgaaatgtgtcttcctcatttaacccaacccctctgaatcagagaggtgcggagggctgccttaattgacatccacgtcttcgccgcctggggaacagtgggttaactgccttgctcaggggcagaacagactCCATGTTCCGAAACGGACATTATCACACAGAAGATAATGCATACAAGTTCCTAGACTTTACACCAATTAGACAGTACTTCATCTTTTCTCGACATGTTTTATTTGTATATTTCCCATCAGAGTATAAGaagtgtttttatatatatttgcagTTTCATGAAAATGAATAAAGTAGTGTTGTCCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1795374 lncRNA downstream 89938 60281305 ~ 60282580 (-) True G1569173
TU1795420 lncRNA downstream 96834 60275447 ~ 60275684 (-) True G1569215
TU1795419 lncRNA downstream 97125 60275189 ~ 60275393 (-) True G1569214
TU1795417 lncRNA downstream 98157 60274126 ~ 60274361 (-) True G1569212
TU1795416 lncRNA downstream 99062 60273244 ~ 60273456 (-) True G1569211
TU1795491 lncRNA upstream 2104 60376975 ~ 60383390 (-) True G1569273
TU1795492 lncRNA upstream 3118 60377989 ~ 60384352 (-) True G1569274
TU1795495 lncRNA upstream 4043 60378914 ~ 60387859 (-) False G1569276
TU1795494 lncRNA upstream 4778 60379649 ~ 60387859 (-) True G1569276
TU1795515 lncRNA upstream 29189 60404060 ~ 60404542 (-) True G1569290
XM_036953420.1 mRNA downstream 117794 60201948 ~ 60254724 (-) True LOC110496644
XM_036953421.1 mRNA downstream 117796 60201948 ~ 60254722 (-) False LOC110496644
LOC110496641 mRNA downstream 171976 60018634 ~ 60200542 (-) False LOC110496641
XM_036953419.1 mRNA downstream 440428 59906906 ~ 59932090 (-) False LOC110496642
XM_021572653.2 mRNA downstream 633929 59737270 ~ 59738589 (-) False LOC110496637
XM_036953434.1 mRNA upstream 50178 60425049 ~ 60470121 (-) False LOC110496650
XM_036953430.1 mRNA upstream 50178 60425049 ~ 60568860 (-) False LOC110496650
XM_036953431.1 mRNA upstream 50178 60425049 ~ 60603916 (-) False LOC110496650
XM_036953429.1 mRNA upstream 50178 60425049 ~ 60603918 (-) False LOC110496650
XM_036953432.1 mRNA upstream 50178 60425049 ~ 60603918 (-) False LOC110496650
TU1795466 other downstream 21759 60348776 ~ 60350759 (-) True G1569258
TU1795401 other downstream 121149 60241931 ~ 60251369 (-) True G1569198
TU1794475 other downstream 635738 59729179 ~ 59736780 (-) True LOC110496637
TU1794038 other downstream 1215474 59155028 ~ 59157044 (-) True G1568017
TU1793943 other downstream 1297870 59004845 ~ 59074648 (-) True G1567931
TU1795498 other upstream 4982 60379853 ~ 60389092 (-) True G1569277
TU1795654 other upstream 235616 60610487 ~ 60616016 (-) False LOC110496651
TU1795648 other upstream 236921 60611792 ~ 60616292 (-) False LOC110496651
TU1795650 other upstream 236921 60611792 ~ 60612891 (-) False LOC110496651
TU1795655 other upstream 237294 60612165 ~ 60616016 (-) True LOC110496651

Expression Profile