RNA id: TU1795485


Basic Information

Item Value
RNA id TU1795485
length 676
lncRNA type sense_over
GC content 0.47
exon number 5
gene id LOC110496648
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60372518 ~ 60374871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGGCGCCCATCAACAGCTGAAGTTGGAGCACTCCAGAGGTTTATAAACACCATGAGCAACACAATGTGTGCCCCTCGCGAACAAATTATAGAAAATGAAGAAGACCTAAAGAAGTTAAGGTTTGTGTAGAAGGGCTGGATGATGACCCTGCAGAGGAATTCAGAGGTCTACCTCATCAAGTTCCAGAAACTCACCAGTGCAAGGGCAGCCAAAAGGCACATGGATGAGAAGAGTTTCTTTGGAGGTTTACTACATGTGCTATGCCCCAGAGTATGAGACAGTGGAGAACACCAGATTAAAGCTGCAAGACGGAAGATATGTGAATAGGACGGCTCAAAATAAAGAACAGGACCAGGGGGATGAAGAGAAAAAAGCCCATGTCTTCAGATACATTTGCTACCACAGCCAGGACTTCTTAAGGTAGCATCAGTTCCTGAAGTCAAGCCAACAGAGAAGAAGACAAAGCCAGGAAAGCCTCGGAAGATAATCTAACAGGGAAAAGGAAAgggtgatacctagtcagttgtccaactgaatgtattcaactgaaatgtgtcttcctcatttaacccaacccctctgaatcagagaggtgcggagggctgccttaattgacatccacgtcttcgccgcctggggaacagtgggttaactgccttgctcaggggcagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1795374 lncRNA downstream 90130 60281305 ~ 60282580 (-) True G1569173
TU1795420 lncRNA downstream 97026 60275447 ~ 60275684 (-) True G1569215
TU1795419 lncRNA downstream 97317 60275189 ~ 60275393 (-) True G1569214
TU1795417 lncRNA downstream 98349 60274126 ~ 60274361 (-) True G1569212
TU1795416 lncRNA downstream 99254 60273244 ~ 60273456 (-) True G1569211
TU1795491 lncRNA upstream 2143 60376975 ~ 60383390 (-) True G1569273
TU1795492 lncRNA upstream 3157 60377989 ~ 60384352 (-) True G1569274
TU1795495 lncRNA upstream 4082 60378914 ~ 60387859 (-) False G1569276
TU1795494 lncRNA upstream 4817 60379649 ~ 60387859 (-) True G1569276
TU1795515 lncRNA upstream 29228 60404060 ~ 60404542 (-) True G1569290
XM_036953420.1 mRNA downstream 117986 60201948 ~ 60254724 (-) True LOC110496644
XM_036953421.1 mRNA downstream 117988 60201948 ~ 60254722 (-) False LOC110496644
LOC110496641 mRNA downstream 172168 60018634 ~ 60200542 (-) False LOC110496641
XM_036953419.1 mRNA downstream 440620 59906906 ~ 59932090 (-) False LOC110496642
XM_021572653.2 mRNA downstream 634121 59737270 ~ 59738589 (-) False LOC110496637
XM_036953434.1 mRNA upstream 50217 60425049 ~ 60470121 (-) False LOC110496650
XM_036953430.1 mRNA upstream 50217 60425049 ~ 60568860 (-) False LOC110496650
XM_036953431.1 mRNA upstream 50217 60425049 ~ 60603916 (-) False LOC110496650
XM_036953429.1 mRNA upstream 50217 60425049 ~ 60603918 (-) False LOC110496650
XM_036953432.1 mRNA upstream 50217 60425049 ~ 60603918 (-) False LOC110496650
TU1795466 other downstream 21951 60348776 ~ 60350759 (-) True G1569258
TU1795401 other downstream 121341 60241931 ~ 60251369 (-) True G1569198
TU1794475 other downstream 635930 59729179 ~ 59736780 (-) True LOC110496637
TU1794038 other downstream 1215666 59155028 ~ 59157044 (-) True G1568017
TU1793943 other downstream 1298062 59004845 ~ 59074648 (-) True G1567931
TU1795498 other upstream 5021 60379853 ~ 60389092 (-) True G1569277
TU1795654 other upstream 235655 60610487 ~ 60616016 (-) False LOC110496651
TU1795648 other upstream 236960 60611792 ~ 60616292 (-) False LOC110496651
TU1795650 other upstream 236960 60611792 ~ 60612891 (-) False LOC110496651
TU1795655 other upstream 237333 60612165 ~ 60616016 (-) True LOC110496651

Expression Profile