RNA id: XM_036953432.1


Basic Information

Item Value
RNA id XM_036953432.1
length 3791
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC110496650
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60425049 ~ 60603918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAACCAGCAGACGGCAGAGAAAAAGAGGAAGTGAAAACATAATCTGGAGCGGAgcggaggagagggacagaatacGCACGCACGACTGACTGTGACACAAACTCTGAACATCAGCGTTTTGCTACATGAGAAGTTCCATCGCTTGGCCAGGTTTGGATGAGAGCTCctcagtgagacagtgagaggcACCTCCATACCCCTCCACCGCCATCATGCCACCGCCCTCCGACATCGTCAAGGTGGCCATCGAGTGGCCAGGGGCCTTCCCTAAGCTCATGGAGATAGACCAGAAAAAGCCCCTCTCAGCCATTATCAAAGAAGTGTGCGAAGGATGGTCTTTGGGGAACCACGAAAACTTTGCTCTGCAAAATGCTGATTCCACTAATTTCTACATCACAGAAAAGAATCGCAATGACATAAAGAATGGTTCAATACTGCGACTGACAACCTCTCCTtctcagATGGCGGGCCAGCTCCACGAGAGGATCCAGTCATCTAGTATGGATGCCAAGCTAGAGGCCCTAAAGGACCTGGCCAACTCTTCCAGAGACGTCACCTTCGCCCAAGAGTTCATCAACCTGGACGGCATCTCACTGCTCACACAGATGGTGGAGAGCGGCACAGATTTTGGCGACTTATTGTCGTTCACGCTGACGGCGTTCGTGGAGCTCATGGACCACGGCATCGTCTCCTGGGATACCTTCTCTGTTGCCTTCATCAAGAAGATTGCAGGTTACGTGAACAAGTCAGCCATGGACACGGCTGTGCTGCAGCGGTCTCTGGCCATCCTGGAGTCAATGGTGCTCAACAGTCAGGACCTCTACCAGAAGGTGGCGCAAGAGATCACAATCGGACAGCTTATACCCCATCTGCAGGGGACTGATCAGGACATTCAGACATACACCATCGCTGTGATTAACGCCTTGTTCCTCAAGGCCCcggaagacaagagacagTTTGATGAGAGCAGTGTGAACATCCTTGATTGTCCTCTGACAgAGATGGCCCACATTCTAGCCCAGAAGCAGCTGCGTTCCATAATACTAAGTaACGTGATCCGGAGCCCTAAGCCAATCAATGATGAGATGGCCCACCAGCTGTACGTGCTGCAGGTTCTGACCTTTAACCTCTTAGAGGACCGCATGATGACCAAGATGGACCCTCAGGACCAGGCCCAAAGAGACATCATCTTTGAGCTGCGCAGGATTGCGTTCGACGTGGAATGTGAGCCGAACAACAGTGGCAGCATCGAGAAGAGAAAGTCCATGTACACCCGTGACTACAAGAAACTAGGTTTCATTaaCCATGTGAACCCTGCTATGGACTTCACTCAGATTCCTCCTGGGATGCTGGCTCTGGATAACATGCTGTACTTCGCCAGACACCACCAGGATGCCTACATCAGGATTGTTCTGGAGAACAGCAGTCGAGAGGACAAGCACGAGTGTCCGTTCGGCCGCAGCAGCATCGAGCTGACCAAGATGCTGTGTGAAATCCTCAAAGTGGGAGAGCTGCCCAGTGAGAACTGTCATGATTTCCACCCTATGTTCTTCACCCACGACCGCTCCTTCGAAGAGTTCTTCTGCATCTGCATCcagctgctcaacaagacctgGAAGGAGATGAGGGCCACCAGCGAAGACTTCAACAAGGTGATGCAGGTGGTAAGAGAGCAGATCATGCGAGCACTGACACAGAAGCCTAATTCCCTGGACCAGTTGAAGAGTCGCCTGCAGAACCTGAGTTACACTGAGATCCTGAAGATACGCCAGTCTGAGAGGATGAACCAAGAAGACTTCCAGTCACGCCCCATCCTGGAGCTGCGGGAGAAGATCCAGCCAGAGATCATGGAGCTTATCAAACAACAGAGGCTCAACCGTCTGTGTGATGGAACCTGCTTCAGGAAGATCAGCAGCCGCCGGAGGCAAGatAAGTTCTGGTACTGTCGACTGTCTCCGAACCATAAAGTCCTGCACTACGGAGATCTGGAGGAGAGCCCTCAGGGAGAGGTGCCCCATGACTCTCTACAGGAAAAATTACCCGTGGCCGACATGAAAGCGGTGGTCACTGGTAAGGACTGTCCTCACATGAAGGAGAAGGGATCTCTGAAGCAGAACAAGGAGGTTCAGGAGCTGGCCTTCTCCGTCCTCTATGAGTCAGATGAGTATTTAAACTTCATCGCTCCGGACAAGCATGAGtACTGTGTGTGGACGGACGGTCTGAACGCCCTCCTGGGGAAGGAGATGACCAGTGACTTCACCAAGTCAGACATGGACACCCTACTCTCCATGGAGATGAAGCTCCGCCTCCTCGACCTGGAGAACATCCAGATCCCAGAGGCCCCTCCCCCCATTCCCAAAGAACCTAGCAACTATGACTTTGTTTATGACTGCAACTAACTAACCAACCATTCAAAATAACTTAGCACCTGGACTGGACCAACCAACTCTCTTTTTTCTAAAACGGCAACTGgaaaaaatggaaaataaaaaaattatgatGAAATGATGAGCGACAGAAAAAGGATTATATTGAACAATTTTCCTTCCTTCTTGCTAAACTTCTTTTTTTAATTAAAGGGTGCGTTTTAATAGGTTTGCAGCACTTAATGACTTTTTGCGACCCACTGACTGAACCATCCCATCACCATGGAGACCAAACCAGGAAGCATCCATATGGGTCCTTTGGGTCCTAAACCAAACATGCTCTTCTAACGGGCTCAATGGTCTCTAAACATTGTTGTTTGGTCGTCACTCTCCAAGATGTCGTCACAGTGTTCCTCTCACCTTAAAACCTGCTCACTCTTCACTCCTTCACTGAAGCGTATGTCATTTGCTTGGGGTTTGTTGTTGAAAAGCTCTTTGATAAACGCTtggatgttttgttttgttgactttcgACAGACTGTAAAGAGGTGTTGAGGGACGTTAAGTTTTTATCTCCAACAGTCTgggtgtgtcctaaatggcaccctattctctatatagtgcattaccttTGACCAGGATTATAAtaactgcactatatagggaataaagtagtgtactatgtagggaatggggtgctatTTCAGACACAGAATCTGTTTTACATTTACGTGGCAATGTTAATGTGGCACGGTAATGTTTCTGAGAGGAAGAAAGGATCAAGTGTATTTAAGATGATGAAGTGTATATTTTGAGTTTTTCTCCCAGGTATCTTACTCCATACTTCACATACTGTCTTTAGACTGTTACAATAAGTGTGTTGTTCTCAAACCTGGCACTGTAATACAATATAGGAAACTGCCTCTGAAGTTCCTGAAGCCTTCTATCCCCATATCACGGCTGCTTTGAGCATACTGTGCACTCTCACACTGGCTTAgcccaaacaaacacacaacttTAATAGCTACATGCTTCCTGAGACATACACCTGTCTCTTTCCTTCATCTTGATACCGTTCGATCAGGCTCAATTGCGACTGCTGTAACATTCCGAAGCAATattgagcaaaataaataaataaataaagatccTCGTGATGCTGATGGTGTAATGTAGTGATATTTGTGCTGCTGCCAAGTAGACAGTATTGGGgatgtttgtgtttttaataAAGGGAACTTGTTTTGTTTTCAAGATCTATGTGGCCGTCAAAATTTGGAGGTTCatgtacattttatttaaaaGCGAATCATGAGTGGATATTTCTAATATGATTTATTATTTAATACCTTCAGATGTTCGTATCTAGGTCTGAAAGCCCCTCAACCTGCTGTTTACATTAAAGATTTAAGGAAACTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1795525 lncRNA downstream 356 60414193 ~ 60424693 (-) True G1569299
TU1795515 lncRNA downstream 20507 60404060 ~ 60404542 (-) True G1569290
TU1795495 lncRNA downstream 37190 60378914 ~ 60387859 (-) False G1569276
TU1795494 lncRNA downstream 37190 60379649 ~ 60387859 (-) True G1569276
TU1795492 lncRNA downstream 40697 60377989 ~ 60384352 (-) True G1569274
TU1795649 lncRNA upstream 6569 60610487 ~ 60616292 (-) False LOC110496651
TU1795651 lncRNA upstream 6569 60610487 ~ 60614467 (-) False LOC110496651
TU1795652 lncRNA upstream 6569 60610487 ~ 60615404 (-) False LOC110496651
TU1795656 lncRNA upstream 6925 60610843 ~ 60616016 (-) False LOC110496651
TU1795661 lncRNA upstream 21862 60625780 ~ 60631951 (-) True G1569410
XR_002469583.2 mRNA downstream 50178 60372518 ~ 60374871 (-) False LOC110496648
XR_002469585.2 mRNA downstream 50178 60372518 ~ 60374871 (-) False LOC110496648
XR_002469584.2 mRNA downstream 50180 60372518 ~ 60374869 (-) False LOC110496648
XM_036953420.1 mRNA downstream 170325 60201948 ~ 60254724 (-) True LOC110496644
XM_036953421.1 mRNA downstream 170327 60201948 ~ 60254722 (-) False LOC110496644
LOC110496651 mRNA upstream 12338 60616256 ~ 60642154 (-) False LOC110496651
XM_021572670.2 mRNA upstream 41692 60645610 ~ 60670570 (-) True c18h18orf21
XM_036953440.1 mRNA upstream 663363 61267281 ~ 61323861 (-) False elp2
XM_036953441.1 mRNA upstream 666865 61270783 ~ 61323861 (-) False elp2
XM_021572676.2 mRNA upstream 875110 61479028 ~ 61493313 (-) True LOC110496657
TU1795498 other downstream 35957 60379853 ~ 60389092 (-) True G1569277
TU1795466 other downstream 74290 60348776 ~ 60350759 (-) True G1569258
TU1795401 other downstream 173680 60241931 ~ 60251369 (-) True G1569198
TU1794475 other downstream 688269 59729179 ~ 59736780 (-) True LOC110496637
TU1794038 other downstream 1268005 59155028 ~ 59157044 (-) True G1568017
TU1795654 other upstream 6569 60610487 ~ 60616016 (-) False LOC110496651
TU1795648 other upstream 7874 60611792 ~ 60616292 (-) False LOC110496651
TU1795650 other upstream 7874 60611792 ~ 60612891 (-) False LOC110496651
TU1795655 other upstream 8247 60612165 ~ 60616016 (-) True LOC110496651
TU1795693 other upstream 89460 60693378 ~ 60694099 (-) True G1569439

Expression Profile