RNA id: LOC110496651


Basic Information

Item Value
RNA id LOC110496651
length 1315
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110496651
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 60610487 ~ 60642154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTGGGACCAGGCATGCTCGACTCTCTCTGAGATGCAGACAGCGCTGCGATGGCATGCGCAATCAGAAGCAGAAAATAACTACGCTTGTCCCGAGTGTATTGGTGTTCGAGAAATCGTATCAAACTGAAATGAAAGGGTTATTTTATTAACACAGTTATCCAATGTCGTTGCAATGTCTAGTCGAAAGAGATCGCTATACTCGGACGACAGAGGGGACCGCAAAAGGCACAATGAATCAAAACAcgatgtggaaaaactcaaggaaCAAGCGACAAAAACTGAACCAAGAAGTGCAAAAGCTGAAGCATGTGAAGACTTATGAAAAACCTCCTGGATTCATTAAGGAAGACTACAAACCAGAGGACTGTATTCCTGCTGATCCAGGAAATGAGGATGCTAGAGACTTCCTGGCTCAGGCCCCCACCAAGGGGCTGTGGATGCCTCAGGGGAAGGGGGTGAAAGTGATGCAGTGTTGGAGATGCAGCGTTATGGACACAGGACGGGGGACCGAGAGTGTCCCTTCTTCATCAAAGGAAACCAGAACCTGGAGCAGTTCAGAGTGGCACACGAAGACCCAATGTACGACATGATCAGAGAAAACAAACAGAATGAAAAAGAAACTACCTTCTGGATCCAGCAGCTGCAGCAGCTCCTGCAGGATGCTACCTCTTCCTCTGACAGGTCCTCCTCCACCAGTGAGAGCAAGAAGAGGAAACacaagaaaaagaaagaaaataagaaaaagaaACACCACAAGTTCTCCAAAACCAGTGACTGTTCTGAGTCTGACTGAGCCGTTGGAACCTTCCTGGATTGTTCTTGCAGGGAGAGgtgactacactacactgcaGTGTCTGTCAGTCAGTGAGCGGCTACGGTGGTTCTTACCCAATGGCTCAGTGTCGCTTCAATGGTGCATTATGAAGTGCACACTAGATGACCCTCTTTGGTTCAGCCTTCCCCTCTGCCTTCCTTCCCTCCACCTTTAAATAATGCATGACTTGTCCCATCCCTCATATGGTTAATGGGTTCATTAGTCCTCTACTCCATTAGATCATACCGAATAGGATCCTATGGACGTGCAGTGGTGATTGTGAATGTAGGGCCCCTCAGGAGAGGAACTCTAACAGCATTGGTAATgacatgttatttgtcacatgcgctgaataaaaTGGGTGTAgaccttccagtgaaatgcttcctgacAAGCTTTCTTAACAGAATTAAGTAACAAGATCAAAACATGAGAAATAAAACACACAAGAATTAAGCtattatacagggagtaccagtaccatatacagggagtacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1795656 lncRNA downstream 240 60610843 ~ 60616016 (-) False LOC110496651
TU1795652 lncRNA downstream 852 60610487 ~ 60615404 (-) False LOC110496651
TU1795651 lncRNA downstream 1789 60610487 ~ 60614467 (-) False LOC110496651
TU1795571 lncRNA downstream 133176 60481739 ~ 60483080 (-) True G1569338
TU1795566 lncRNA downstream 141138 60474755 ~ 60475118 (-) True G1569333
TU1795682 lncRNA upstream 83255 60725409 ~ 60728216 (-) True G1569430
TU1795726 lncRNA upstream 98085 60740239 ~ 60741809 (-) True G1569467
TU1795725 lncRNA upstream 99892 60742046 ~ 60743190 (-) True G1569466
TU1795724 lncRNA upstream 101191 60743345 ~ 60744221 (-) True G1569465
TU1795734 lncRNA upstream 111338 60753492 ~ 60755163 (-) True G1569475
XM_036953429.1 mRNA downstream 12338 60425049 ~ 60603918 (-) False LOC110496650
XM_036953432.1 mRNA downstream 12338 60425049 ~ 60603918 (-) False LOC110496650
XM_036953433.1 mRNA downstream 12338 60425049 ~ 60603918 (-) False LOC110496650
XM_036953435.1 mRNA downstream 12338 60425049 ~ 60603918 (-) True LOC110496650
XM_036953431.1 mRNA downstream 12340 60425049 ~ 60603916 (-) False LOC110496650
XM_021572670.2 mRNA upstream 3456 60645610 ~ 60670570 (-) True c18h18orf21
XM_036953440.1 mRNA upstream 625127 61267281 ~ 61323861 (-) False elp2
XM_036953441.1 mRNA upstream 628629 61270783 ~ 61323861 (-) False elp2
XM_021572676.2 mRNA upstream 836874 61479028 ~ 61493313 (-) True LOC110496657
XM_036953444.1 mRNA upstream 903505 61545659 ~ 61566202 (-) False LOC110496659
TU1795654 other downstream 240 60610487 ~ 60616016 (-) False LOC110496651
TU1795655 other downstream 240 60612165 ~ 60616016 (-) True LOC110496651
TU1795650 other downstream 3365 60611792 ~ 60612891 (-) False LOC110496651
TU1795498 other downstream 227164 60379853 ~ 60389092 (-) True G1569277
TU1795466 other downstream 265497 60348776 ~ 60350759 (-) True G1569258
TU1795693 other upstream 51224 60693378 ~ 60694099 (-) True G1569439
TU1796851 other upstream 649150 61291304 ~ 61293151 (-) True G1570468
TU1796842 other upstream 667653 61309807 ~ 61323821 (-) True elp2
TU1797091 other upstream 1023174 61665328 ~ 61665910 (-) True G1570695
TU1799050 other upstream 2793644 63435798 ~ 63491169 (-) True G1572487

Expression Profile