RNA id: XM_036953441.1


Basic Information

Item Value
RNA id XM_036953441.1
length 2287
RNA type mRNA
GC content 0.55
exon number 20
gene id elp2
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 61267281 ~ 61323861 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACGGTAACTCTACCGGTTAGCATACAAGATGGCGGCTCCCATAATAGAAACATGTCATGTCGCATGTTGTGCAAATCGAACCCCAAATGTTCTTTCATGGGGTCGTGGGGGGCTCATTGCTTATGGAACATGCAATTCTGTCGCTCTCTATGACCCACAGGAGAAGTGTGTTGTTGCTGTCCTCAATGGACATACCGGGAGGGTGAACACAGTCCAGTGGGTCCACAGAGAGGACTGTGGTAGAGAAACTCACCTGGTGTCAGGAGGGTCTGACAGTCTAATGATTGTGTGGGAGGCCCATGATGGAAAGTTTAAACAGTATGTTGAGTGTGTTGGGCATACTGGACCAGTGTGTGCTGTGGATGCCATCCACCTGGACAACAATAAGCTACTCATTGCCTCCACAGCCTCCGACTCCACTGTAAAACTATGGCTCTACACTGGGAGTAAAGCGGAGTGCACCCATACCATATCCTTTGGGAGCGGGTTTATGATGGATGTCTCGCTAGCGTGGTTGCCAGGCAGCAGAGTTCCCATACTTGCCTGCGGGGGCGACGATTGCAGAATCCATTTGTATGCACAGTGCAATGGACAGTTCAGGAAAGTCCTCTCCTTGCAAGGGCATGAGGATTGGATCCGTGGTGTGGAGTGGGCCTGTGTAGACGGGGATCTGTTACTGGCCAGCTGTGCTCAGGATTGTCTGATCCGGGTTTGGAGGCTGGTTGCCAAGTCTAGGACGAAGAGAAACGCGCAGGAAGAACGCACCATTAGGATGTCTGAAGATGTCTTTACACTGACACAGAACGATGCGTCCTCAGCATTTGCAGTGACGCTAGAGTCAGTCCTTGCCGGCCACGAGAACAAGGTCTATGGAGTCCACTGGCAGCCCCCTGTCATCAAAGGTGGCGACCAGCACCAGGCTCTGAGCCTGCTCTCTGCTTCCATGGACAAGACCATGATCCTGTGGGCTCAGGAGGAAGGCTCAGGGGTGTGGGTGGAGCAGgTGCGTGTAGGGGAGGTGGGGGGAAACACACTGGGTTTCTACGGTTGTCAGATGAGTCCAGACGGATCCATGATCCTGGCCCATGCCTTCCACGGAGCGCTGCATCTCTGGACCCAGAGCCACGGCAAAGAGGGAGAGTGGAGACCAGGGGTGGTGATATCTGGTCACTTCAACGCAGTTCAGGACCTGAGCTGGGACCCTGAGGGGGAATTCATCCTCAGTGTGGGGTCAGATCAGACCACCAGGCTACTAACACCCTGGAAGAGGATGGACCAAACACAGCCTACCTGGCACGAGATCTCTCGCCCCCAGATCCACGGCTATGACATGCAGTGTCTGGCCATGGTGGGCCGCTTCCAGTACGTCTCCGGGGCCGACGAGAAGGTCCTCCGGGTGTTCCGCGCCCCCCGCAACTTTGTGGAGAACTTTGCAAACATCTCTGGCACGCCTCTGGCGAAACTGCTGGCCTCCAGTGACACTGTAGATCAACCAGAAGGGGCCAGTACCCCTGCCCTAGGTCTCTCCAACAAGGCTGTGTTTCAAGGTGATCTTACTCCCAAGACCAATGAAGAGGAGGGAACCGGGTTCAACAGTGTTTCTGACCGATACCAAGAGTCCTACTTCCACCCGCTCACCCTTAATGagCCACCGCCAGAGGACCACCTCCTTCAAAATACACTATGGCCTGAGGTCCAAAAACTgtatGGACATGGCTTTGAGATGTTCTGTCTGGCGTCTGACAGTGGGAGGACGGTGGTGGCTTCGGCATGTAAGGCCTCTAAGGCTGAGCATGCGGCCGTGCTGCTCTGGAGCTCCACTTCCTGGCGCCAGCTACAGGCACTGCCCTGCCACAGCCTCACTGTCACCCAGATGGCCTTCTCTCCCAATGGACTGTTCCTATTGGCCGTGTCCCGGGACAGGACCTGGTCGCTATGGAAACGGGACGACCCCGCCGCCACCCCTACAAACACAGAGCCCCATTTCTCCCTGTACACATCTACCAGGAAGGACACGGCCGTACACACGCGCATCATATGGTCATGTGACTGGAGCGCCGACAACAAGTACTTTGTGACGTCAAGTCGAGACAAGAAGGTCATTATTCTACACCAGCAAGGCCTTAGTGTTGTTAGTAGAGGTGATAGTGTGGGGTGACTGCAGTAGTTCTGAGGCCATTGTGACCCCTGATGAACCCCCAGTCATCCGGCCCTGTTCCTCCATATTAGATGTAGGAGACTCGGCCACTGCTGTCTCCTTCTGCCCCATCCTGTGCCCCGGCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1796329 lncRNA downstream 13213 61254316 ~ 61257570 (-) True G1570016
TU1796237 lncRNA downstream 168692 61097237 ~ 61102091 (-) False G1569933
TU1796239 lncRNA downstream 168692 61097237 ~ 61102091 (-) False G1569933
TU1796238 lncRNA downstream 168692 61099292 ~ 61102091 (-) True G1569933
TU1795743 lncRNA downstream 498301 60772246 ~ 60772482 (-) True G1569484
TU1797026 lncRNA upstream 202653 61526514 ~ 61526841 (-) True G1570633
TU1797042 lncRNA upstream 264285 61588146 ~ 61588404 (-) True G1570649
TU1797051 lncRNA upstream 279401 61603262 ~ 61603611 (-) True G1570657
TU1797056 lncRNA upstream 285038 61608899 ~ 61609236 (-) True G1570661
TU1797059 lncRNA upstream 291067 61614928 ~ 61615137 (-) True G1570664
XM_021572670.2 mRNA downstream 600213 60645610 ~ 60670570 (-) True c18h18orf21
LOC110496651 mRNA downstream 628629 60616256 ~ 60642154 (-) False LOC110496651
XM_036953432.1 mRNA downstream 666865 60425049 ~ 60603918 (-) False LOC110496650
XM_021572676.2 mRNA upstream 155167 61479028 ~ 61493313 (-) True LOC110496657
XM_036953444.1 mRNA upstream 221798 61545659 ~ 61566202 (-) False LOC110496659
XM_036953443.1 mRNA upstream 221798 61545659 ~ 61587847 (-) True LOC110496659
XM_021572680.2 mRNA upstream 366190 61690051 ~ 61708402 (-) True LOC110496662
XM_021570533.2 mRNA upstream 473151 61797012 ~ 61827619 (-) False hsf1a
TU1795693 other downstream 576684 60693378 ~ 60694099 (-) True G1569439
TU1795648 other downstream 654491 60611792 ~ 60616292 (-) False LOC110496651
TU1795654 other downstream 654767 60610487 ~ 60616016 (-) False LOC110496651
TU1797091 other upstream 341467 61665328 ~ 61665910 (-) True G1570695
TU1799050 other upstream 2111937 63435798 ~ 63491169 (-) True G1572487
TU1799674 other upstream 2689918 64013779 ~ 64014965 (-) True G1573054
TU1799679 other upstream 2859097 64182958 ~ 64244814 (-) True LOC110496680
TU1800646 other upstream 3646430 64970291 ~ 64971167 (-) False G1573887

Expression Profile