RNA id: XM_036951076.1



Basic Information


Item Value
RNA id XM_036951076.1
length 1146
RNA type mRNA
GC content 0.61
exon number 1
gene id LOC110496878
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 62483507 ~ 62484818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGAGATTCTCATGTCCTTGGTGGTCAATGCAACACCTGAAGATATAAACAGTACTTCCAACCCCCAGAGGGGGGTGCCCTACCTGAAGAAACTAGCCCACCTGGACGAGGGCCTGTACGAGGAGTTCTACAGCCTGTGGGTGACACTGATGGTGGTCAACACCCTGATGTTCGTGGTGGGTGTGGTCCTTAACAGCCTGGCCCTCTACATCTTCTGCCTGCCCTCCCAGATTTCCTCCGCCCCTGTGGTCTATACCATCAACCTGGCAGTGGCTGACCTGTTGGTGGCGCTCTCGCTCCCTGCCCGTATTGCCCTCTACCACAGCGGTGGAGGGTGTCTGGCCTGCTCCTACGTTCACACGTTCAGCTACTTTGTCAACATGTACTGCAGCATCCTCTTCCTCACCAGTATCTGCGTGGACCGCTATATAGCCGTGGTGTGGGCCGGGGCCGGGCGCCGCTGGAGGAGCCCTGGGGTCGCTAAGGGAGTCAGTGTGGGGATCTGGCTCCTCGCCGTGGTGGTCACCTACTCCTTCCAGACCACGGAGCTGGAGATCAAGGCCACGTCATGCTGTCGACTCACCGCCCTCTTTGCCCTGTCCTTCCTGGAGTTCCTGCTCCCCCTGGTGGTCATCGTGACATTCACACTCAGGGTGGCATGCGCCCTAACCGACCCCAGGCTGATGCCTCAGAGCCAGGGCCGGAGGGCCAGAGCAGTCAGGCTCCTGGTGGCTGTCTTGGTTGTCTTCTCCATCTGCTTCATGCCCTTCCACGTGCGCCAGGCGTTGGTGTATTTCCGGATGGGGGGTGACAGAGCACAGCAGGTGTTGGCGTACCATGCCACTGTGACCCTCAGCAGCCTCAACAGCTGCCTGGACCCAGTGGTCTATTGCTTGGTGACGGACAGCTTCCGCTCGGCCATGCGCCGGGCCTGCAGGAAGAGgccaggggcaggggcagggacagggacaggggcgGAGGTGGAGGCGGAGGTGGAGGCGGAGGCAGAGAGGACCAGTGGAGGGGATGTTGCCAGTGGACTAAGGAGTTCAAAAGGATCAGGGACAGCCATGGCTATCGCTCACAGTGTGGCCACATTGACTCTCACCCCCTGCACCCAGCAACAGAGGGAGATGTCTGCATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1797682 lncRNA upstream 603 62482679 ~ 62482904 (+) True G1571228
TU1797647 lncRNA upstream 10413 62418728 ~ 62473094 (+) True G1571201
TU1797674 lncRNA upstream 16998 62466108 ~ 62466509 (+) True G1571224
TU1797567 lncRNA upstream 107422 62375700 ~ 62376085 (+) True G1571133
TU1797565 lncRNA upstream 109040 62373828 ~ 62374467 (+) True G1571131
TU1797688 lncRNA downstream 5013 62489665 ~ 62490105 (+) True G1571234
TU1797690 lncRNA downstream 10369 62495021 ~ 62495274 (+) True G1571236
TU1797692 lncRNA downstream 13410 62498062 ~ 62498270 (+) True G1571238
TU1797740 lncRNA downstream 113611 62598263 ~ 62598765 (+) True G1571283
TU1797753 lncRNA downstream 137263 62621915 ~ 62623066 (+) True G1571292
XM_036951075.1 mRNA upstream 9225 62451402 ~ 62474282 (+) True LOC110496877
XM_036953468.1 mRNA upstream 48374 62407415 ~ 62435133 (+) False LOC110496672
XM_036953467.1 mRNA upstream 48374 62407416 ~ 62435133 (+) False LOC110496672
XM_021572695.2 mRNA upstream 48374 62407418 ~ 62435133 (+) True LOC110496672
XM_021572691.2 mRNA upstream 334969 62144489 ~ 62148538 (+) True LOC110496670
XM_036953470.1 mRNA downstream 17379 62502031 ~ 62570890 (+) True LOC110496879
XM_036953471.1 mRNA downstream 95092 62579744 ~ 62624967 (+) False LOC110496880
XM_036953483.1 mRNA downstream 149395 62634047 ~ 62869394 (+) False LOC110496881
XM_036953484.1 mRNA downstream 149395 62634047 ~ 62869394 (+) False LOC110496881
XM_036953479.1 mRNA downstream 204548 62689200 ~ 62869394 (+) False LOC110496881
TU1797492 other upstream 221290 62261624 ~ 62262217 (+) True G1571059
TU1796812 other upstream 509765 61967948 ~ 61973742 (+) True recql4
TU1795291 other upstream 1867213 60609948 ~ 60616294 (+) False G1569099
TU1797735 other downstream 95417 62580069 ~ 62585057 (+) True LOC110496880
TU1797760 other downstream 387317 62871969 ~ 62875067 (+) False G1571298
TU1797759 other downstream 388687 62873339 ~ 62875067 (+) False G1571298
TU1800516 other downstream 2416516 64901168 ~ 64902474 (+) True G1573779
TU1800657 other downstream 2489202 64973854 ~ 64975933 (+) True G1573889

Expression Profile