RNA id: XM_036953495.1


Basic Information

Item Value
RNA id XM_036953495.1
length 2571
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110496683
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 64649122 ~ 64663208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGGTATACTCCGGCACCGGCATAAACTGCGACCCAAGACGTGTCAGAGGGGTTTGGTAACGTTGATTTTATCAGACAAAACGAGTACCCATCATGGCTGCGGTGTGTACTGCCTCCCGTGTCCTCGCCAAAAAGGTGCTGTCAGCCAAGGCGCTTCCGGCAGTATCCCAGAGCTCCAGGAAGCTCCACTTCTCAGTCTATGGGAAGAACAACTCTAAAGTATCAGATGGCATGTCCACACAGTACCCTGTGGTAGACCATGAGTTTGATGCAGTGGTAGTGGGTGCCGGCGGAGCAGGGCTTCGTGCTGCTTTCGGTCTGTCTGAGGCTGGCTTCAACACAGCTTGTGTCACAAAGCTGTTCCCCACCAGGTCACACACAGTGGCTGCACAGGGCGGGATCAATGCAGCCCTTGGAAACATGGAGGGAGATGATTGGAGGTGGCACTTCTACGACACGGTGAAGGGATCTGATTGGCTGGGAGACCAGGACGCCATCCACTACATGACAGAGCAGGCTCCACATGCTGTGGtggagCTGGAGAACTTTGGCATGCCCTTCAGCCGTACCGAGGATGGTAAAATCTACCAGAGGGCTTTTGGAGGCCAGAGTCTGAAGTTTGGCAAGGGAGGCCAGGCCCACCGGTGTTGCTGCGTAGCTGACAGAACTGGCCACTCCCTCCTGCACACACTCTACGGGCGATCTCTGAGGTACGACACCAGCTACTTTGTGGAGTACTTTGCCCTGGACCTGCTGATGGAGGATGGAGAATGCAAGGGAGTAATTGCTCTGTGTATGGAGGATGGATCGATCCACCGCTTCAGATCCAAGAACACGGTCATCGCCACAGGTGGTTATGGCCGTACCTACTTCAGCTGCACCTCAGCCCACACCAGCACAGGAGACGGTAATGCCATGGTGACCCGTGCAGGCCTGCCCTGCCAAGACCTGGAGTTTGTCCAGTTCCACCCTACAGGCATCTATGGAGCCGGCTGTCTGATCACAGAGGGTTGCCGTGGCGAGGGAGGAATCCTTATCAACAGTGAGGGTGAGCGCTTTATGGAACGCTACGCCCCCAACGCCAAGGACCTGGCCTCCAGAGACGTGGTGTCCCGCTCCATTACCATCGAGATTCGAGAGGGCAGGGGATGTGGCCCAGAGAAGGACCATGCATACCTGCAGCTGCACCATCTCCCCCCACAGCAGCTGGCCACTCGTCTACCCGGCATCTCTGAGACCGCCATGATCTTCGCCGGCGTGGACGTCACCAAAGAGCCCATCCCCGTCCTGCCCACTGTACACTACAACATGGGAGGAATCCCCACCAACTACAGGGGACAGGTCATCACCCACACAACCGAGGAGGGTGATAAGGTGGTGCCAGGGCTGTTTGCCTGTGGCGAGGCCGCCTGTGCCAGTGTCCACGGTGCCAACCGTCTGGGAGCCAACTCCCTGCTGGATCTGGTGGTGTTTGGACGCGCCTGCGCTCACACAATCGCTGACATCTGCACTCCAGGAGAGAAGCTCTCCCCCCTGAAGCCCAACGCAGGAGAGGAGTCTGTGGCCAACCTGGACAAGCTGAGGTTTGCTGATGGCAACATGAGGACCTCTGAGATCAGAGTGAACATGCAGAAGACCATGCAGAACCACGCTGCTGTGTTCCGTACCGGCAAGGTCCTGAAGGAGGGATGTGACAAGATGGACGCCATCTACCAAACCCTGGACGACATCAAGACCTTCGACAGAGgtATTGTGTGGAACACTGACCTGGTGGAGACCCTGGAGTTGCAGAACCTTATGCTGAATGCTGTGCAGACCATCAACTCTGCCGAGCAGCGCCAGGAGAGCAGGGGAGCCCACTCCAGAGAGGACTTCAAGGACCGTATGGATGAGCTGGACTACGCCAAGCCTCTGGCAGGACAGGTGAGGAAGCCCATTGAAGAGCACTGGAGGAAACACACCCTGTCCACTGTGGATCCAAAGACCGGGAAGGTAACTCTGAAATACAGACCTGTTATTGATAACTCACTGGATGCAGAGGACTGTGCTGCTATCCCTCCCGCCATCCGTTCCTATTAAGCACCATACCGATCCAGTGCAGACTATTTTATTCATGATCAGAATGGATGCTTTTGCAGTTATCATTGATATGAAGTTTCAACCTTGATTTTCCCTTTGCTCATAAATACTATACGTGGTATATTTCACATGTTCAATAATAAACTGGAACATATTGTAACCTTCAGAGAATTGTGCAAAATggagtgttttgttttgtgtgcACTTTCAACTTTCACCGCATTTGCTATAGTTCTTACAggcaaataaatacatatttaataTTTAAATATTGAATGATTCTAGAAATCTGTGTAAAAAGAAAAGCGTAATCacagttttggggggggggggggggggggggtgaaccaTGTTTAAGATATCCACACATAATGCCAATACAATACTCAATTAGTTCATTCTGTCCTTTGCTCAACTGTATGTAAAGTTCTGTTCATCTTGCATGCTTAATGTATTGTTGGTTTTATCTCAATAAAGATGCTCAAATAAA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006105 succinate metabolic process biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0008177 succinate dehydrogenase (ubiquinone) activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1800399 lncRNA downstream 21185 64627709 ~ 64627937 (-) True G1573685
TU1800387 lncRNA downstream 45614 64603309 ~ 64603508 (-) True G1573673
TU1800385 lncRNA downstream 55785 64593087 ~ 64593337 (-) True G1573671
TU1800351 lncRNA downstream 100263 64543843 ~ 64548859 (-) False G1573639
TU1800410 lncRNA upstream 6806 64670014 ~ 64670213 (-) True G1573696
TU1800418 lncRNA upstream 36586 64699794 ~ 64699993 (-) True G1573702
TU1800419 lncRNA upstream 37643 64700851 ~ 64701208 (-) True G1573703
TU1800422 lncRNA upstream 41149 64704357 ~ 64705650 (-) True G1573705
TU1800428 lncRNA upstream 47546 64710754 ~ 64710983 (-) True G1573711
XM_021572702.2 mRNA downstream 367 64644060 ~ 64648755 (-) True si:rp71-45k5.4
XM_036953490.1 mRNA downstream 404285 64017203 ~ 64244837 (-) False LOC110496680
XM_036953489.1 mRNA downstream 404748 64017203 ~ 64244374 (-) False LOC110496680
XM_036953491.1 mRNA downstream 404748 64017203 ~ 64244374 (-) False LOC110496680
XM_036953493.1 mRNA downstream 622318 64024649 ~ 64026804 (-) True LOC118941203
XM_021572707.2 mRNA upstream 10651 64673859 ~ 64677293 (-) False LOC110496685
XM_021572713.2 mRNA upstream 10651 64673859 ~ 64677301 (-) False LOC110496685
XM_021572708.2 mRNA upstream 10651 64673859 ~ 64677302 (-) False LOC110496685
XM_021572714.2 mRNA upstream 10651 64673859 ~ 64677302 (-) False LOC110496685
XM_036953496.1 mRNA upstream 10651 64673859 ~ 64677306 (-) False LOC110496685
TU1799679 other downstream 404308 64182958 ~ 64244814 (-) True LOC110496680
TU1799674 other downstream 634157 64013779 ~ 64014965 (-) True G1573054
TU1799050 other downstream 1157953 63435798 ~ 63491169 (-) True G1572487
TU1797091 other downstream 2983212 61665328 ~ 61665910 (-) True G1570695
TU1796842 other downstream 3325301 61309807 ~ 61323821 (-) True elp2
TU1800646 other upstream 307083 64970291 ~ 64971167 (-) False G1573887
TU1800648 other upstream 307159 64970367 ~ 64971167 (-) False G1573887
TU1802126 other upstream 646835 65310043 ~ 65311051 (-) True G1575088
TU1802374 other upstream 1134422 65797630 ~ 65798675 (-) True G1575282
TU1802602 other upstream 1351261 66014469 ~ 66053735 (-) True G1575457

Expression Profile