RNA id: XM_021572720.2


Basic Information

Item Value
RNA id XM_021572720.2
length 2043
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110496691
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 64828329 ~ 64833323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTCTTTGCTTTTCCCTATTTTAACTCATCATTGAAGACGCTGTTTTGTTTTTCGGAGATTCATCATGGCGATGCATACGAAGGCGACACCGCCACAGATTCCCGACACACGTCGGGAACTCTCGGAACTGGTCAAGAGGAAACAAGAACTTGCGGAGACATTGGTGAACTTGGAAAGACAGATCTATGCATTTGAGGGCAGCTACTTGGAAGACACCCAGATGTATGGGAATATCATTAGAGGATGGGACAGATACCTCACCAACCAAAAAAATTCCAACAGCAAGACAGACCGAAGAAACAGAAAGTTCAAGGAGGCAGAGCGTCTGTTCAGCAAGTCTTCAGTCACTTCTGTAGCAGCTGTCTGTGCACTTGGCGGGATACCAGATCACATGAATGAAAAGCGTGAGCCCGGCAGTGGGACAGAGAGCGACACATCCCCAGACCTCCAGAACCAGGAGAACGAGCCAAGTCAGGAGGACACTGAGGACGCAGACGAGGCACTGCAGGACCTCAAACCCCAGAAGGCTGCCTCGTCCTCCTCCGGAAGCCACCATGGGAGCCACAAGAAAAGGAAGAACAAAAACAGACACAGCCCTTCTGCCATGTTTCATTATGACTTTGAGTCCTGTTCCCTTAATCCAGTTATGAAAAAGTCTGCTCTTCCTGCCAAAATGAGATGGGGAGCTCACAGatTCGACATGAAGGTGAACAAAAAACCCAGAGCGGACTATTCAACTTGATGAACGGGGGTGTTAAGCACTTCAGACCAGAACTGGCCACACAGGAGACGTCTTCAGTGAAGCAGAGAATCACTTCTCTGGGCTTTGTGAACTTTATATGCCTTATGTTAACTGACTTGGTTTCTGCTTTGTGTATATTGTATGAAATGTTGCCCCTCCCCACCGGCAACTAGAAATATTTGTGCTCCATGATTTTCCTGCAGAAAAGTACACGGTGTGTAATTGCATGTTACTCAATACCCAGCTGGGATTATTGTATAGTGTTGAACGTTCTATATTTATCATGTAACTTCACATTTTCCTCTGCTCTTCTTGTGACAAAAATAAGAAGATTATATTTGTCGTTGTCTGGTCGTTTGTTAGCTCTAGAGTATCCCagcttctgtttttttttttacattttattttgagtTTTGTTTAGCATAGCTATGTAATAAAACATTGAAATGATAAATATTACTATGTATAGTTTATGGTAAAAATCTAAATTTGTGAAGGTCTTAGCCCACCAGAAGCATTGAAAATGTCTTGCTGTTAATCAAAATCTCATCTCTGTCTTTACTCTGCACTCTTCAGTGATGATATAGCAGGGAAATCAATAGGGAAGCTAGTTTATGACCAACAGACCAACATCTGTGTCTGACGGCATCTACTGTCTGGTTTCATTGTGGCTTCTTCATGGCCCTGTTACCTGCCAAGGTGCTCAGACGAGGCTCTCTCTCTAGTCCACCATCTTATTATTAGAGTTTCAAATAGCTCCCTATTCCATTTATACTACACTACGTTTGATTGGTGAAGTTTCAGTGAGTTCATGGAAATTGTTTTAGTACTGTGTTCACCTTCAAACGGCTTTATTCTGGCTCCCAAGTATGATTAAAATAACTCTGTTTACACACAAAGATATGACGTCATGTCATTCCTACGGTGGCCGTTTCAGAGATTTGAGTTTGATTTCTGAGCAGTGGCAGTTTGAAGTGAACCAGGGGGCAACAAGCTGACAACACATGACCCATGCCATGTTGGGGAACAGTGTACTATATACAGTTTAACTAGTAATTGAACTACATTTTACAGTAGGTTGGTTGGTACTTGAACGAAATTCAAATATTGGTACTGTTTTCAGTAGgtaactttttgttgttgttgtgtagctaactactggaactacacacgtttgcaaaaggaaaataaaatgtGGCTGAAGTAGGTAATCGTTTATTTTTCGGCATCAtacctgcctaattctcacttgaaacattgTAGTGTGTataataggctaaattacaccTTTTAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1800485 lncRNA downstream 4709 64823287 ~ 64823620 (-) True G1573757
TU1800483 lncRNA downstream 6584 64821395 ~ 64821745 (-) True G1573755
TU1800478 lncRNA downstream 15863 64811698 ~ 64812466 (-) True G1573750
TU1800446 lncRNA downstream 58466 64769456 ~ 64769863 (-) True G1573729
TU1800429 lncRNA downstream 116694 64711125 ~ 64711635 (-) True G1573712
TU1800490 lncRNA upstream 2027 64835350 ~ 64835585 (-) True G1573762
TU1800583 lncRNA upstream 47513 64880836 ~ 64881508 (-) True G1573842
TU1800587 lncRNA upstream 51729 64885052 ~ 64885442 (-) True G1573845
TU1800602 lncRNA upstream 99811 64933134 ~ 64938987 (-) True G1573860
TU1800650 lncRNA upstream 137044 64970367 ~ 64970630 (-) True G1573887
XM_021572716.2 mRNA downstream 59042 64766115 ~ 64769287 (-) True LOC110496688
XM_021572706.2 mRNA downstream 132325 64680203 ~ 64696004 (-) True LOC110496684
XM_036953498.1 mRNA downstream 150997 64673859 ~ 64677332 (-) False LOC110496685
XM_036953501.1 mRNA downstream 150998 64674517 ~ 64677331 (-) True LOC110496685
XM_036953499.1 mRNA downstream 151023 64673859 ~ 64677306 (-) False LOC110496685
XM_036953514.1 mRNA upstream 140508 64973831 ~ 64980126 (-) False LOC110496694
XM_036953515.1 mRNA upstream 140508 64973831 ~ 64983055 (-) False LOC110496694
XM_021572728.2 mRNA upstream 140508 64973831 ~ 64983629 (-) False LOC110496694
XM_036953517.1 mRNA upstream 140508 64973831 ~ 64983629 (-) False LOC110496694
XM_036953516.1 mRNA upstream 140508 64973831 ~ 64987996 (-) True LOC110496694
TU1799679 other downstream 583515 64182958 ~ 64244814 (-) True LOC110496680
TU1799674 other downstream 813364 64013779 ~ 64014965 (-) True G1573054
TU1799050 other downstream 1337160 63435798 ~ 63491169 (-) True G1572487
TU1797091 other downstream 3162419 61665328 ~ 61665910 (-) True G1570695
TU1796842 other downstream 3504508 61309807 ~ 61323821 (-) True elp2
TU1800646 other upstream 136968 64970291 ~ 64971167 (-) False G1573887
TU1800648 other upstream 137044 64970367 ~ 64971167 (-) False G1573887
TU1802126 other upstream 476720 65310043 ~ 65311051 (-) True G1575088
TU1802374 other upstream 964307 65797630 ~ 65798675 (-) True G1575282
TU1802602 other upstream 1181146 66014469 ~ 66053735 (-) True G1575457

Expression Profile