RNA id: XM_021572743.2


Basic Information

Item Value
RNA id XM_021572743.2
length 2198
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110496706
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 65755121 ~ 65767988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGCTTACTTTCAGTTTCACAGTGCAAGGGTTCCTCCACAGTGAGGAGACGTCAAACGTAAtgcattctttctctctctctctctctctcattgggtTGATAAGTGCTAGAGCCAACGCAACCGTGTGAATTTTCAGTTTTACACAGCCACCATGGAGGAGGACGCGGGACAATCTATCCCATTCAAGTACCCCGCCTCTGACTTCTTGTTGACTGTCGGAGGTATGTTGTTTTTTCTCCTGGATGTGGTACTAGACGTGTGGGCGGTGGTGACTTTCTATCAACAAGAGGCCTACGTGTTCATGGGACTGCTGATGTTTCTACTACTAGGCTCCTCAGCCCTGGTCCAGGCTTTCAGCTGGCTGTGGTACCACTATGACAAGGACAGCACTGAGACCAGGACAGAGAGCCTTGTGAAAAGCCTTCACTCACTCAAGATCCTTCATGTGTTCCAGATGGGAGTCTACCTCAGATATGCTGGTCTTGTGAGGATCTCGATATGTGGCTTCTGCTGTAGAAAGCGTTACATGGAGGGCAACGCCGTGTATCTGACCCATGACCTTAGCCTGCTGCGCCTCATCGAGACCTTCTCTGAGAGCGCGCCACAGCTTGTCCTCATGATTACCATCATCATccagaggggagaggtggagccCATTACAAtCTTGAAGGCACTTGGTTCAGTGTCTGCCATCGCCGTCAGCGTGACCATGTATCACCGCTCCCTGCGTTCCTTCCTCCCAGACAAGGCCAAGCAGGGCTGGGGCTCCTCAGTGGTCTACTTCCTGTGGAACCTGCTCCTGATTGGTCCACGTGTGGCAGCAGTCGCCCTCTTTGCTTCGGTCTTCCCCTGCTTCATCGCTGCCCACTTCCTGTCTTCCTGGATGGTTCTATTTTTTGTCGCCTGGCAACTGAAGACAAACTTCATGGACAGCGGCGGCGGAGAATGGCTCTACCGGGCCACCGTAGGTCTCATCTGGTACTTTAGCTGGTTCAGCATAGTGGAGGGGCACACCAGGCAGCGGAGCACCATCTACCACACCTGGATAGGAGTGGATATTGGGATGCTTTGTGGTTTTTGGGTGTGGCAGATGATGAAGAACCCTCCAAATCTTGAACTGCCACTAGATCCCTATGTCATCTTTGTCATTATGATCTCACTCTACATAGCTGGACTCTGTCTCAAGGTGACATACTACAAGTTCTGTCACCCAAAGATTACAAAGCAGGAAGAAGTTGAGTGTCATCTCGAGCTGATGTCGGAGTCTGTGGTGGTCCCCCCAAATGGGGAAGATGTGGTTGACTTTAGGTTTATGGGTCATACAGAGCGTCCAGAACCGTCCGTCAGGGTCAATAAAAGGATGAGGAATTTAGCTGGTAATTTTTACTCTTAATCCAGATTATCAGATGGCTCCTACGCATTGAGAAGACTGTATGGGCTTGTTCAACATTGCAGCCGATAACCCAGCCAGGCAACTGCCAACGGACTGATCTACAAATGACCTTGGctcataaataactactcattatttGTTGATCAGTCACAATTTAAACACACAATGAGTGAAAGGTCTGTCTGTTTTCAAATCCatccttgtacttgattgatgaattcaTGTCAGTAATTAGTagggaactcccctcacctggttgtctaggtcttcagGGAAAGGGAAAAACCAAAAACCCACACTCAGctctccgtggaatgagttttacACCCCTGCCCTACTTAAACGAACCAGCTCTACAGCTTGAAACACTGAGAAATGTTGACGCTTTCATTAAAATGACTGGAATGATTTGTTCTATGAAGACGAGGATGGCGATATGAGACAGTCCTGTTTGGCACAGTGCATTTCTAAATATGAAGGTAAACAGTGCATTTCTAAATATGAAAGTAAACATTATAGTAATGTTTATCATGGTCATGAACTTGTCTCATTAATGTGACCTTGTGAGTACAGCTAATCAGGGTTACTTATTGACAGTGGTGGAACAAAATAATAAATTGACATACTTTAGACTTTAATAAACGTAAAGATACTTTTACTTTAGTAAttttcacccagtaaaatactacttcagtaactctagaagtatttggtttgaaatatacctAAGTATCCAAAgaaaatggaattgctaaaatatagttaagtcaaaagtagttcattattaagcaaaccaaacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802416 lncRNA downstream 10725 65744034 ~ 65744396 (-) True G1575320
TU1802413 lncRNA downstream 12972 65740693 ~ 65742149 (-) True G1575318
TU1802221 lncRNA downstream 38481 65713768 ~ 65716640 (-) False G1575169
TU1802222 lncRNA downstream 38481 65713768 ~ 65716640 (-) False G1575169
TU1802223 lncRNA downstream 38481 65713768 ~ 65716640 (-) False G1575169
TU1802439 lncRNA upstream 370 65768358 ~ 65768692 (-) True G1575332
TU1802440 lncRNA upstream 1063 65769051 ~ 65769287 (-) True G1575333
TU1802379 lncRNA upstream 2938 65770926 ~ 65771627 (-) True xkr8.3
TU1802442 lncRNA upstream 8429 65776417 ~ 65776728 (-) True G1575335
TU1802443 lncRNA upstream 10457 65778445 ~ 65778752 (-) True G1575336
XM_021572739.2 mRNA downstream 134921 65610940 ~ 65620200 (-) True LOC110496703
XM_036953558.1 mRNA downstream 153220 65514942 ~ 65601901 (-) True LOC110496890
XM_036953538.1 mRNA downstream 634065 65056656 ~ 65121056 (-) False LOC110496698
XM_036953537.1 mRNA downstream 639065 65056951 ~ 65116056 (-) True LOC110496698
XM_036953539.1 mRNA downstream 651366 65056656 ~ 65103755 (-) False LOC110496698
XM_021572744.2 mRNA upstream 2927 65770915 ~ 65781022 (-) False xkr8.3
XM_036953528.1 mRNA upstream 126996 65894984 ~ 66007363 (-) False epb41a
XM_036953529.1 mRNA upstream 126996 65894984 ~ 66007363 (-) False epb41a
XM_036953533.1 mRNA upstream 126996 65894984 ~ 66007363 (-) False epb41a
XM_036953524.1 mRNA upstream 126996 65894984 ~ 66007364 (-) False epb41a
TU1802126 other downstream 444070 65310043 ~ 65311051 (-) True G1575088
TU1800646 other downstream 783954 64970291 ~ 64971167 (-) False G1573887
TU1800648 other downstream 783954 64970367 ~ 64971167 (-) False G1573887
TU1799679 other downstream 1510307 64182958 ~ 64244814 (-) True LOC110496680
TU1799674 other downstream 1740156 64013779 ~ 64014965 (-) True G1573054
TU1802374 other upstream 29642 65797630 ~ 65798675 (-) True G1575282
TU1802602 other upstream 246481 66014469 ~ 66053735 (-) True G1575457
TU1802627 other upstream 287694 66055682 ~ 66056239 (-) True G1575475
TU1802672 other upstream 470110 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other upstream 470110 66238098 ~ 66242696 (-) True ppp1r11

Expression Profile