RNA id: XM_036953526.1


Basic Information

Item Value
RNA id XM_036953526.1
length 3110
RNA type mRNA
GC content 0.55
exon number 22
gene id epb41a
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 65894984 ~ 66039471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCTCCTTTTTTACTAGAAcctaaacacatttttttttaaatagcccggataataacacacatggaattgtGACTCTATTTACCCAATGCGCTAAAATAGTAGAGAACCAGCCGTTTATTTTCATTGAGGagtatttgtttattttcatgaactaGAGAGAAGAAGCTATTGCCATGACGACAGACGAGGCGACAGAGAGCCAGCATCAGAAGAAACCCAGCCAGCAGGAGGCGGAGCAGCATCAGGTCACGCCTCCTGACCACGGACCCTCTGAGTCCCAGGCCGCCACCAGCCCCGCCACCTCGCCCCAGAGCACTGGTTCGCCCTCGTACTCCTCTCCCCAGGAGGAGGTGCAGCTGAGACCCCGTCGGCGCACCTCAGCTGGCCGCGGCCTCTCgcgcctcttctcctccttcctgaAGAGGCGTTCCCAGTGCGAGGAGGacgggggagagaagggggagaaaggaggggacGGGGAAGAGCCCAAGGCGCCCATCGCTGACTGTGAACCAGAGCTCAAGATCGAGGGTGATCAGAACCTTGACCTGCACTCGCTCAGCAGCAACGAGGCGCAGCTTGTCCAGGTAGACCAGAAGGAAGACCCCGAGAAAGACTCTGAGGTAGAGGGCGGAGAGACCGAtaagaagaaaagagaagaggacagtgcccaggggaaggagaaagaggaggaggagcctgagggagaaggagagaaagagggagtagagaagacaacagaggaaGACGCTCAACCTCCTAAGCCTCCCCGTCGACCCAGGATCATGCAGATTAAAGTTACACTGCTGGACGACACTCTGTTTGAGTGTGAGCTGGAGAAACATGCCAAAGGTGTGGAGCTGTTCACCAAGGTGTGTGACCACCTCAACCTGCTGGAGAGAGACTACTACGGCCTGGCCATCTGGGAGTCGCCCTCCATGAAGACCTGGATGGATTTCACCAAGGAGATCCGCAGGCAGGTTCAAGGTGCAAAGTTAGACAAGATCTGTGCAGACGCACAATCATGTACAGGCACCAATTATGACTTCACCTTCAATGTGAAGTTCTATCCTCCTGACCCAGCCCAGCTTTCTGAAGACATCACCAGGTACTACCTGTGTCTCCAGCTGCGTAAGGACATCCTGGGGGGCCGTCTACCCTGCTCCTTTGTCACGCTGGCCCTTCTGGGTTCCTACGCACTGCAGTCAGAGCTGGGGGAGTACGACCCAGAGACACACGCACCAGACTACGCCAAGGACCTGAGGCTGGCCCCGGGACAAACCAAGGAGCTAGAGAAGAAAGTCATGGAGCTGCATAAGACATACAGGTCGATGAGTCCAGCACAGGCAGACATGGCCTTTCTGGAGAACGCCAAGAAACTAGCCATGTACGGAGTGGACCTGCACCAGGCCAAGGATCTAGATGGAGTGGATATTATGCTGGGTGTGTGTTCTGGGGGTTTGATGGTCTACAAGGACAAGCTGAGGATCAACCGTTTCCCCTGGCCCAAAGTCCTCAAGGTCTCCTACAAACGCAGCAGTTTCTTCATCAAGATACGCCCCTCAGAGCTGGAGCATTACGAAAGTGCCATTGGTTTCAAACTGCCAAACTACAAGGCCTCCAAGAAGCTGTGGAAAGTGTGTGTGGAGCATCACACCTTCTTCAGacTGACCTCTACTGAGGTGGCTACCACTCCCAGGAAGTTCCTTGCACTGGGTTCTAAGTTCCGCTACAGTGGGCGGACCCAGGCTCAGACCCGCCAGGCCAGCTCTATGATTGACAGGCCAGCCCCCCTGTTCCAACGCTCGGCCAGCAAGAGGAACTCACGCAGCCTGGACGAAGCCATGGTGTCCACTCCAGACAAGAGCACCCGTCCAGTCAGTGCTCCCATTATGTCCCCCGTCTCTCCAGGGGATGCCGCCCCGCCCACTGTGACCTCTGCCCTGCCCCGCAGTGAGCGGCGAGAAGCATCCACCGCCCCGGGCCGCCAGTCACGCTCAGCAGAGAGGAAGACCAAGGAAGAGGCCAAGGTGAAGAGCAAGGTGACAGAGGTCTCCAAGACACAGAGCTCCAGACCACAGTCCACCCCAGAGTTCAAGagggagggagccagGAGGAGTAGGCATCATGCCCCTgcagtcaccaccaccaccaatgggacagagagagagagaaagagccagCATTCGCCCCGAGACAGAACCGGCACGGAGACGGTGCGCGTGAAGAAGAAAAGAGCTAAGAAACTTGAGGGTCAAACTATTTATATCAGGCATAGCAATATAATGTTGGAGGACCTGGATAAGACCCATACAGAGATCATGCGTCACCATACCAGTATCAGTGAGCTGAAGAGAAGCTTCATGGAGTCTGTTCCGGAGCCGCGGCAGAGCGAGTGGGACAAACGCCTGTCCACCCACTCACCCTTCCGCACGGCCAGCATCAACGGACAGCTGCAGTCAGGCACTGACGGGTCTAACGTCGTGAAAACACAGACTATCACCATCTCAGACGTGTCTAACTCCCTACGAGGAGACGTCTATAACAAGGAGGTCCCCATCGTGCACACTGAGACCAAGACCATTACCTACGAGTCAGCGCAGTGTCTCCTTCAGCCCGTAGACAGCATGGCAGAGAGGGACTCTGGAATGCTGTTGAGTGCCCAGACCATCACCTCAGAGACAGTCAGTACAACCACCACCACTCAGATCACCAAGacgGTGAAAGGAGGGATCTCTGAGACTCGCATTGAGAAGAGGATTGTTATAACTGGAGACACAGAGATTGATCACGACAAGgctctGGCCCAGGCCATCAAGGAGGCGAAGGAGCAGCACCCGGACATGTCTGTGACCAAAGTGGTGGTGCATCAGGAAACAGAGATCACCCCAGATTAACCCCAGGTTTACCTCTCCTATAACCAGGCTCCTGCAATGCTCCACCCTCCCTGTCTGCATCCTGCTCTTTTTAAAATGCCTTCATCATTGTGACGACATGCGTGTGGTTCTTCTTTTGTGGAGTCTTTTCTGTTTTTACGCTTTTTATCTTGAGTGTTGGATCAGGGGAATGTTGAGGTAATGTTACTGaagttgtgtctctctctgtcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802531 lncRNA downstream 6566 65888987 ~ 65889353 (-) True G1575402
TU1802530 lncRNA downstream 7321 65887379 ~ 65888598 (-) True G1575401
TU1802468 lncRNA downstream 65868 65829614 ~ 65830051 (-) True G1575360
TU1802463 lncRNA downstream 74295 65821422 ~ 65821624 (-) True G1575355
TU1802462 lncRNA downstream 74553 65820221 ~ 65821366 (-) True G1575354
TU1802598 lncRNA upstream 2297 66009662 ~ 66009901 (-) True G1575454
TU1802600 lncRNA upstream 3422 66010787 ~ 66011002 (-) True G1575456
TU1802619 lncRNA upstream 39105 66046470 ~ 66047152 (-) False G1575472
TU1802620 lncRNA upstream 39105 66046470 ~ 66048751 (-) False G1575472
TU1802621 lncRNA upstream 39105 66046470 ~ 66047819 (-) False G1575472
XM_021572744.2 mRNA downstream 114897 65770915 ~ 65781022 (-) False xkr8.3
XM_021572743.2 mRNA downstream 127931 65755121 ~ 65767988 (-) True LOC110496706
XM_021572739.2 mRNA downstream 275719 65610940 ~ 65620200 (-) True LOC110496703
XM_036953558.1 mRNA downstream 294018 65514942 ~ 65601901 (-) True LOC110496890
XM_036953537.1 mRNA downstream 779863 65056951 ~ 65116056 (-) True LOC110496698
XM_036953554.1 mRNA upstream 44270 66051635 ~ 66068093 (-) False LOC110496714
XM_036953555.1 mRNA upstream 44270 66051635 ~ 66068096 (-) True LOC110496714
XR_005037534.1 mRNA upstream 73089 66080454 ~ 66094549 (-) True LOC118941206
XM_036953556.1 mRNA upstream 106252 66113617 ~ 66117779 (-) True LOC118941204
XM_036953562.1 mRNA upstream 130083 66137448 ~ 66167665 (-) False LOC110496715
TU1802374 other downstream 97244 65797630 ~ 65798675 (-) True G1575282
TU1802126 other downstream 584868 65310043 ~ 65311051 (-) True G1575088
TU1800646 other downstream 924752 64970291 ~ 64971167 (-) False G1573887
TU1800648 other downstream 924752 64970367 ~ 64971167 (-) False G1573887
TU1799679 other downstream 1651105 64182958 ~ 64244814 (-) True LOC110496680
TU1802602 other upstream 7104 66014469 ~ 66053735 (-) True G1575457
TU1802627 other upstream 48317 66055682 ~ 66056239 (-) True G1575475
TU1802672 other upstream 230733 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other upstream 230733 66238098 ~ 66242696 (-) True ppp1r11
TU1802697 other upstream 294050 66301415 ~ 66305176 (-) True G1575541

Expression Profile