RNA id: XM_021572763.2


Basic Information

Item Value
RNA id XM_021572763.2
length 1331
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110496725
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66802870 ~ 66810492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCCATTGCATCGGACGTGTTGAATTACAGAACTGAATAGCCGACGGAAACGAATGTGTAGAAACCTGCCCCTCCAAAATAGTACGTTATTCACTCTGTGGTCAGTAGACTTGTCTCTACACTTGACGGTTTGGAGTTGGATATTCGATACAGCCTGTGGAACTCAACTCCTCTTTGTAATTTGATTTCCACGAAACCATCACTGCCCAACACCATGTGCTACAGGCACGGTCACTGAAAGGCACTGCCGGAGTGTCGAGgtGTATGAGGTGTGATGGCGTCGTGCTCTGAGGCCTGTAACTCAGGGTCTGGATGTGGGGCAGGGTCCTCAGGCTGTGAGGTAGGTTCTAGCTGTGCCTGTCTGCAGTTTGGGGTGCGTTCCTACCTGCACCATTTCTATGAGGGGTGCAGCACTGCATCAGGGTGGGAGAGAGACCCTGAGGGAGTGGGGGACGTCCAGACCTTGAGATCGCCCCTGAGGTGGAGCTCAGCACTCTGGAAGgtctctctGGCCCTTGGTCTCCTGATGGTGACCTCTGGTCTGGTCAGTCTGTCCGTGGGTTACTCCGGCCCCACCAGGATCGAGTCCTTCGGGGAGGGGGACCTCCTCTTCATAGACACCCAGGCTGTCAGTTTTAACAGGGGTCTGCATCACTGCGTGGCGGCCGGGATCGGTCTCACCTGCCTGGGAACGGGTCTGACCGTGGCGGGCCTCCTTTTCTGGTCCTTCTCCAGGAGCCGATTGAAAGAGAGGCTATAtcggagagagatagagaagaagggagggatagaggggggggcacagggaggaggacagggggagatggGGACGGCTGTTATGAAGGCCCCTGGAGCAGGGGAGGGGAAGGTGCCTGCCACCCTGACCAAAGTGGAAACGGTCCAGCCATCAGGAAGATAATCCCCATAGGTTTTAAAAGGTCTTTATGTGGTGCACATGTGTCCTCTTTTAAAATGAGCTGAATTTAGTCAAATCGCACATGTTGAAAAGTCTATAAGCTATATAAATAATGGTCACATGTTGAAAAGTCTATAAGCTATTTGAATGGTGGTCTTGATAAGGAGTGATTTGGTACAACTCTCATACATTTGTTCTTTGGATTTACGCATCAATGATTTTTGCATTGTGTTCCACCTCACTGTTGTAAAATATAAGAAATGGACTTTTCTCATGTCATTTTAGAACAATTTGGGAGACCAATTTTACTCAATTCCATAGCACTTTTTCTCCTAAGATGAATTGTGTGTTGGGTAAAGCAATCCGTGTGGAATTGAATACATACAATGCATACatgaaaatactgtatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802946 lncRNA downstream 399 66799157 ~ 66802471 (-) True G1575747
TU1802966 lncRNA downstream 4687 66797150 ~ 66798183 (-) True G1575765
TU1802963 lncRNA downstream 11819 66790109 ~ 66791051 (-) True G1575762
TU1802935 lncRNA downstream 47428 66752695 ~ 66755442 (-) False G1575739
TU1802986 lncRNA upstream 26048 66836540 ~ 66836924 (-) True G1575780
TU1803008 lncRNA upstream 66418 66876910 ~ 66877138 (-) True G1575802
TU1803011 lncRNA upstream 70961 66881453 ~ 66891836 (-) True G1575804
TU1803012 lncRNA upstream 82622 66893114 ~ 66894046 (-) True G1575805
TU1803027 lncRNA upstream 97838 66908330 ~ 66910169 (-) True G1575814
LOC110496895 mRNA downstream 13876 66787048 ~ 66788994 (-) True LOC110496895
XM_036953580.1 mRNA downstream 27789 66748182 ~ 66775081 (-) True LOC110496726
XM_036953579.1 mRNA downstream 27790 66748182 ~ 66775080 (-) False LOC110496726
XM_021572765.2 mRNA downstream 106543 66693338 ~ 66696327 (-) True LOC110496727
XM_036953570.1 mRNA downstream 488971 66294113 ~ 66313899 (-) True ddx39b
LOC118941007 mRNA upstream 47445 66857937 ~ 66870926 (-) False LOC118941007
XM_036951080.1 mRNA upstream 247632 67058124 ~ 67058549 (-) False LOC118941008
XM_021572761.2 mRNA upstream 298086 67108578 ~ 67112583 (-) False sox4a
XM_036953582.1 mRNA upstream 515378 67325870 ~ 67337196 (-) False LOC110496729
XM_036953583.1 mRNA upstream 515378 67325870 ~ 67337196 (-) True LOC110496729
TU1802697 other downstream 497694 66301415 ~ 66305176 (-) True G1575541
TU1802672 other downstream 560174 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other downstream 560174 66238098 ~ 66242696 (-) True ppp1r11
TU1802627 other downstream 746631 66055682 ~ 66056239 (-) True G1575475
TU1802602 other downstream 749135 66014469 ~ 66053735 (-) True G1575457
TU1802980 other upstream 16090 66826582 ~ 66826877 (-) True G1575774
TU1803003 other upstream 59399 66869891 ~ 66870199 (-) True LOC118941007
TU1803115 other upstream 247685 67058177 ~ 67058673 (-) True LOC118941008
TU1803205 other upstream 392709 67203201 ~ 67203487 (-) True G1575977
TU1803506 other upstream 590956 67401448 ~ 67441976 (-) False G1576222

Expression Profile