RNA id: TU1802943


Basic Information

Item Value
RNA id TU1802943
length 613
RNA type TUCP
GC content 0.59
exon number 4
gene id LOC110496725
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 66802870 ~ 66810492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTTGATGTCAAGTGTAGATTCACTGGTTCTGAGAGCTCGTTCTGCAATGGGACTCGAGTAAGACCGTGGCGCGGAAGCGAGCACTCCGGACAAGgtGTATGAGGTGTGATGGCGTCGTGCTCTGAGGCCTGTAACTCAGGGTCTGGATGTGGGGCAGGGTCCTCAGGCTGTGAGGTAGGTTCTAGCTGTGCCTGTCTGCAGTTTGGGGTGCGTTCCTACCTGCACCATTTCTATGAGGGGTGCAGCACTGCATCAGGGTGGGAGAGAGACCCTGAGGGAGTGGGGGACGTCCAGACCTTGAGATCGCCCCTGAGGTGGAGCTCAGCACTCTGGAAGgtctctctGGCCCTTGGTCTCCTGATGGTGACCTCTGGTCTGGTCAGTCTGTCCGTGGGTTACTCCGGCCCCACCAGGATCGAGTCCTTCGGGGAGGGGGACCTCCTCTTCATAGACACCCAGGCTGTCAGTTTTAACAGGGGTCTGCATCACTGCGTGGCGGCCGGGATCGGTCTCACCTGCCTGGGAACGGGTCTGACCGTGGCGGGCCTCCTTTTCTGGTCCTTCTCCAGGAGCCGATTGAAAGAGAGGCTATAtcggagagagatagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1802946 lncRNA downstream 953 66799157 ~ 66802471 (-) True G1575747
TU1802966 lncRNA downstream 5241 66797150 ~ 66798183 (-) True G1575765
TU1802963 lncRNA downstream 12373 66790109 ~ 66791051 (-) True G1575762
TU1802935 lncRNA downstream 47982 66752695 ~ 66755442 (-) False G1575739
TU1802936 lncRNA downstream 47982 66752695 ~ 66755442 (-) True G1575739
TU1802986 lncRNA upstream 26476 66836540 ~ 66836924 (-) True G1575780
TU1803008 lncRNA upstream 66846 66876910 ~ 66877138 (-) True G1575802
TU1803011 lncRNA upstream 71389 66881453 ~ 66891836 (-) True G1575804
TU1803012 lncRNA upstream 83050 66893114 ~ 66894046 (-) True G1575805
TU1803027 lncRNA upstream 98266 66908330 ~ 66910169 (-) True G1575814
LOC110496895 mRNA downstream 14430 66787048 ~ 66788994 (-) True LOC110496895
XM_036953580.1 mRNA downstream 28343 66748182 ~ 66775081 (-) True LOC110496726
XM_036953579.1 mRNA downstream 28344 66748182 ~ 66775080 (-) False LOC110496726
XM_021572765.2 mRNA downstream 107097 66693338 ~ 66696327 (-) True LOC110496727
XM_036953570.1 mRNA downstream 489525 66294113 ~ 66313899 (-) True ddx39b
LOC118941007 mRNA upstream 47873 66857937 ~ 66870926 (-) False LOC118941007
XM_036951080.1 mRNA upstream 248060 67058124 ~ 67058549 (-) False LOC118941008
XM_021572761.2 mRNA upstream 298514 67108578 ~ 67112583 (-) False sox4a
XM_036953582.1 mRNA upstream 515806 67325870 ~ 67337196 (-) False LOC110496729
XM_036953583.1 mRNA upstream 515806 67325870 ~ 67337196 (-) True LOC110496729
TU1802697 other downstream 498248 66301415 ~ 66305176 (-) True G1575541
TU1802672 other downstream 560728 66238098 ~ 66242696 (-) False ppp1r11
TU1802673 other downstream 560728 66238098 ~ 66242696 (-) True ppp1r11
TU1802627 other downstream 747185 66055682 ~ 66056239 (-) True G1575475
TU1802602 other downstream 749689 66014469 ~ 66053735 (-) True G1575457
TU1802980 other upstream 16518 66826582 ~ 66826877 (-) True G1575774
TU1803003 other upstream 59827 66869891 ~ 66870199 (-) True LOC118941007
TU1803115 other upstream 248113 67058177 ~ 67058673 (-) True LOC118941008
TU1803205 other upstream 393137 67203201 ~ 67203487 (-) True G1575977
TU1803506 other upstream 591384 67401448 ~ 67441976 (-) False G1576222

Expression Profile