RNA id: XM_021572761.2


Basic Information

Item Value
RNA id XM_021572761.2
length 4006
RNA type mRNA
GC content 0.46
exon number 1
gene id sox4a
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67105914 ~ 67112583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTGTTGAACGTTATGTTTACAGTATACTGGCAGACCGATAAGGAAAGAGAGGACTATGAAAAAGTGCGACACTTCCATTCTTCCACATGGTTCTGTCACTGCTAAGGCGAGCTGCGCAGACAGCGATATTATACCTCTCATAGGAAAGTTGCAGTGTTGTTTTCAGCAGCGAAGTGCTCTAGGTATCGCAGGGCGAGTTTTCAGTCGCACTGGCAGTTGAACGTTTGATTGCAGAACGTTGAAGGATTTTAACGTGTTATTTCGTTCTCTCTTTTTTTTGAAGATATACTCGCACTAGCGACTAACTGCGCAGCGTCTCCAAAACGGACTGAAAGATAGAGGAGACTTGCAATAACTTTTACGCAATCCGTCCAGTGTGGTTCCATAAACATACGTTTATTGAGTGACTGAAAGAAAACCGATGATATAACAGCATTGGCAACTTTTACGCACTTTGTCACCATAACATAATTCTGAACAGCACTTTTTTTGGTACGTTTTCTGTCTAaccgagagattgagaaagaaagaaagaaagagaaacgaTGGTACAGCACATGAGCCACACAGAGAGCACAGATTCATTCTCTCCTGGTGGGGACGGCACCGATACCGGAGATATGGACTTGGACATGGACGCGTCTCCGACTCCCGGGTCTCCGCTATCCTCCACGGGAGGGGACCGAGGCAACGTCGCCTGGTGTAAAACCCCCACGGGACACATCAAGAGACCGATGAACGCATTTATGGTGTGGTCTCAGATCGAGAGGAGAAAGATCATGGAGCAGAGCCCGGACATGCACAACGCTGAGATTTCCAAGAGGTTGGGCAAGCGCTGGAAACTGCTCAAAGACACAGATAAGATCCCGTTCATCCAGGAAGCAGAGCGGCTGAGACTCAAGCACATGGCCGACTATCCTGACTACAAGTATCGGCCACGGAAGAAGGTTAAGACGCCCAGCTCCAAGACAGAgcggggggagaggggagagaaaggcgCGGATAGGAGCAGGGGTTCTAAGTCCTCATCGAAAAGAGGCTCTGGGTCTAGGGGGAACAGCAGAGTGCCCAAGCCGGGACAGGGGAGCGTCAAGCTGCCTACCCAGGGGCAAGAGTGTGCGTCTCCCGCGGATCACCACACGCTCTACAAATCCAGGTCAGTGACTGGTGCCCGGCAGATACCAGACAAGCCAGCCAGGCGCGGTTACATGTTTAGTGGGGGAGGGAGCTTGGACAGCGGGCCACCCTCTGTGGGAGTCCCAGGGAGTCCCGCCCTGAGCAGCTCGTCTGAGTCCTGTGACCCGATGAGCCTGTATGAAGACCAGGCGACGGGGGCGAACAAAGCACTTTCCTCCAACCCTTCAACATCCTCACCATCATCGGCAGTCCGCCTCAGGTACACACGTGCGTCCTCTCCAACCCCGTCCgcctctcactcctcttcctcctccctctcttcttcctcggATGAAGAGCTGGAGGATGAGCGGTTCGAGCTACAGCCGAGTCCCGGGTTTGAGAGCATGTCTCTGGGCAGCATGGGGCCATGTGAGTCGGAGCTCGACAGGGACCTGGACTGGAGCTTCGGCGAGTGTGGGGCGGGATCTCACTTTGACTTCCCCGACTACTGCACCCCCGAGGTCAGCGAGATGATCTCGGGAGACTGGCTGGAGTCCACCATCTCCAACCTCGTATTCACTTACTGAGCGGCGGAAaggagagagaccacagagaaCAAGAGGGAAAGAGAAGCCCCGCCCCGCGCAAAACTAAAACCCAGTGAGTGTGAAAGAAGAATCTTCAGACATTCTTTCAGATTATTAGGGAGAGTGAAATGTGAGCTAAACGAACCCTCGTTTTGGAAAGAATAGCCTAATATTAATGACATGTGTTTAGGTTAAATTGTGCAGAATGTGTGTATAAAAACATAATCGTCTGTTCCATGTGGGTATTGACAAAGACAGGAACCGGGGACAGACAAGGGCACATTGTTGCCTGGTGCGCCGAACAGAAGGAAAGTGCATCGCTTGCAtttggagagagaagagagaaggactCTGAGCACGCCTCTTTTagaagtgacacacacacagacacacacacacacacagacttactGAACTGAAGTATTCAACCGGCTGGCAGGAGGAGGTTTCTAGTTTGATGGTGAACATGACTATGGGTAAATGGGCTTTTGGAGAGCTTGATGTTGCCATGGAGATGAAAGCAGTATAAGTGACCCACTTCAGTTGTTGTTCTCTGTGTGGGCGGGGTTTATGTAGGTGATATTCAGGTGGGGTTTTTCCTGAAGCTTAACATGCATGCGCTCCCTTGTGGAGTAGTCTGCACTGTTACATTGACTGATGCATCTGAAAATATGTTTATTACAATGTCATTACCGCGctgattgtgtgtgcgtgtgtgagtgagcgcgcgagtgtgtgtgtgtgtgtgtgtgtgtgtgcgatcaCGGAACACAGTTCACAATCACCAGCTTTCCTCTCAACGGCAGGACTTTTAATGAATTAACAACTCAAACTCAGAATCTTTTCTCTGAAACCTTTTACACTCTGAATGCACATTTCAGGACCAATTCCCTTACTGCGCAACGCCTAGCACATCTGGCTGTAGTTATTCTATATCAGATgacgtttttttttatatatatcgaTGTATTTACACCAGccgaacatgtttttttttttttttaatactttgAAGTATTGTTATTGTATAATAGGTCTTGTTTGTGTGTAAACCATGCACCTGGCTGTATCCCTGTGCAGGAGGGCTAGAAGTGTATCTTATTTAAAATGTCGATATCTCTCACTTTTTTTAAAGGAGAACTCAGTAAGTGTGTCATTTTTCTATATGTGTATTTTTTTGTACGATATCTATGGGAGGGAGTGCCAGTGGGTGGTTGCTTTGATTCCCGATGTTCAAAGCCAGAGGGTCCGTTGTCACATATATTCTGCTCCTTTATACAATGTTTACACTTGACAGTATCGCGCCACGTGTTTCTTAAAGGCACAGTGTCTGTATTTACACCAGCCAAGTAAACACATCGACACCCCGCTACGTCACCAGAGCGTCAGCTGCACCCAGTGACTGTGTTTCAACAGTGGATTTGCATAACTTGGACCCAGATGTATTTGTGCTATCTTGTCAAGTGCTTGTCAAGGAGTGGCacgatggcacaaacagactggcgcCCAGGCTACAGTATATCAGAATTGttcaagagagagatagagatgctgTTGGATTGAGAGGAAAACATCGGTATGCTTTTGTTGATAGGTTTGATTTGAAACCACTGGATGGAATGTGACACTCACACATTATAAATGCCTATTTGAgtcagagggaggtggagggaggtggaggaaggtggagggaggtggagaaaggtggagggaggtggagggaggtggagaaagGTGTATGAAGTGCTTCGATCATCTATCATTGCGCAATTGCATAATAAGAGTATTTAATCGTTTTTCTACCTGTTGGCTTACTTGGCTAAGACTAGCTAGCTAATTGTTTTTCCTGTATTATGGCATGGCAAATTAGCAATTGTATTTCAGATTCAGGTATATGTATAGCTGTtgtgttttagattttttttttttaagaatatcGAGGATATTTATGTTTATTGACTGTACTATAATGCAGATACGATTGTGTTTCTATGTAAAATGATCAACGACAGACACTAAAATTGCCATCTTTTGTCATTATGATGTTTATAATGATTGTGGTCCAGGAtctttattttttcatttttttttttttctccatttgtgCAATATGCTGTGTGTATGATCATGTTTCCTCCAATCGTACCATATCTCATTTGAATATAGAACTCAACGCCAGCCAATCGGGTCAACGACTGCCTCAGACCTCTATTACagagcattttttttatttgtttgtatgtttgtttgttttgtttttttttccaaGACGGAAATAAAAATCAGCTGGAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1803119 lncRNA downstream 35925 67072242 ~ 67072653 (-) True G1575894
TU1803111 lncRNA downstream 56604 67051682 ~ 67051974 (-) True G1575886
TU1803110 lncRNA downstream 56980 67051379 ~ 67051598 (-) True G1575885
TU1803091 lncRNA downstream 80795 67027519 ~ 67027783 (-) True G1575867
TU1803076 lncRNA downstream 101058 67007184 ~ 67007520 (-) True G1575854
TU1803131 lncRNA upstream 4590 67117173 ~ 67117386 (-) True G1575905
TU1803133 lncRNA upstream 7038 67119621 ~ 67119917 (-) True G1575907
TU1803136 lncRNA upstream 14399 67126982 ~ 67127425 (-) True G1575910
TU1803146 lncRNA upstream 28722 67141305 ~ 67141693 (-) True G1575920
TU1803172 lncRNA upstream 57639 67170222 ~ 67170436 (-) True G1575945
XM_036951080.1 mRNA downstream 50029 67058124 ~ 67058549 (-) False LOC118941008
LOC118941007 mRNA downstream 237652 66857937 ~ 66870926 (-) False LOC118941007
XM_021572763.2 mRNA downstream 298086 66802870 ~ 66810492 (-) False LOC110496725
XM_021572762.2 mRNA downstream 298405 66802870 ~ 66810173 (-) False LOC110496725
LOC110496895 mRNA downstream 319584 66787048 ~ 66788994 (-) True LOC110496895
XM_036953582.1 mRNA upstream 213287 67325870 ~ 67337196 (-) False LOC110496729
XM_036953583.1 mRNA upstream 213287 67325870 ~ 67337196 (-) True LOC110496729
XM_021572767.2 mRNA upstream 228805 67341388 ~ 67348984 (-) True srfbp1
XM_036953587.1 mRNA upstream 294729 67407312 ~ 67441367 (-) True fndc5b
XM_036951081.1 mRNA upstream 430978 67543561 ~ 67558111 (-) True LOC118941009
TU1803115 other downstream 49905 67058177 ~ 67058673 (-) True LOC118941008
TU1803003 other downstream 238379 66869891 ~ 66870199 (-) True LOC118941007
TU1802980 other downstream 281701 66826582 ~ 66826877 (-) True G1575774
TU1802944 other downstream 298112 66803424 ~ 66810466 (-) True LOC110496725
TU1802943 other downstream 298514 66803424 ~ 66810064 (-) False LOC110496725
TU1803205 other upstream 90618 67203201 ~ 67203487 (-) True G1575977
TU1803506 other upstream 288865 67401448 ~ 67441976 (-) False G1576222
TU1803513 other upstream 288865 67401448 ~ 67441976 (-) False G1576222
TU1803517 other upstream 288865 67401448 ~ 67441976 (-) True G1576222
TU1803844 other upstream 802605 67915188 ~ 67955212 (-) True G1576491

Expression Profile