RNA id: XM_036953587.1


Basic Information

Item Value
RNA id XM_036953587.1
length 1945
RNA type mRNA
GC content 0.54
exon number 5
gene id fndc5b
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67407312 ~ 67441367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagagagagctggagagagagaggatttttgCCATCTGACAGTGCCAGTACGTTTCATTCTGCAGCACTCGAGCTCTCGGGGAGCGCGCCTCTGTAACGAAGCACCGCACAAGGGAAAAAAATAACCTAAACGAGTCCGTGCCGACCGTGCCTCCCGGTCTCGGCTCTGTCCCAGGTGCTGAAAGCGCTGGTGGTGCGTTTCCGTAGCAACCAACGACCAAGTTTAGGCTACACCGCCAATACTGATTTCTTATGACAACAGGAAACCCCGAGTGGTGGAGGAAAGGAGCCCAGTGCGGTGAATGTTAAGCAACTCTCCGCCACAGACCGAGGTGTGGATCCCGTTAACGCGAATAAATGGGATATTCGGTTGGCCGGGCAGGATGTAAAACATCTTTTGAAGGATGGGGAAACAACGCTTCTCTGCGGCGACACTGCCACTGCTCGTTCTGGGTTGGCTCACGGTATCCGTTACCGCTGGTGactCAACTCTGTCGGCTCCTGTCAATGTGACGATCAGGGAGCTGGAGGCGAACACAGCCATAGTCACATGGGAGATACTGGAGGGAGATCCTGTCATCGGATTTGCCGTCACACAACAgAAGAAGGATGTGCGCATGCTGCGGTACATCCAGGAAGTAAACACGACCACGCGCTCCTGTGCATTGTGGGACTTGGAGGAGGACACAGAGTACATTGTCCATGTCCAGAGCATCAGCATGGGAGGCAGCAGTCCTCCCAGTGACCCGGTCAGCTTCAGAACTCCCAGAGAGTCTGAGAAACTGGCCTCCACAGGCCCagacgAGGTGAACAGGGAGGAGATGGAACAGGCAGTGCAGCTCAGAGTTGGAGAGCTCATCATCATCGTAGTGGTGCTCGTCATGTGGGCAGgtgTGATCCTCCTGTTCTGTCGTCAGTATGACATCATCAAAGACAACGAGCCCAACAACAACAAGGACAAAGCCAAGACCTCGTCAGAGTGCAGTACGCCAGAACACCCACAGGGGGGGCTACTGCGCAGCAACGTCTGAAAACAGCCCCCACTGGCCACTCACCTATATGGCAATAACCTCCAATCCTATTCCTCAGGACAGGTGAGGCTACACAGCCAACCAGAACCGTCATACCTGAGGCTGCATCCTGATTCTTCATACTTCTCCTGAAGTGTGCGTGTCCTTGTATCTACAACATGACGATCACCACTACGATGATGATGAGCTCTCCAGCTCCGAGCTAAGACCCCTGACACCATCTCCTCCACAAATCAGCACCTCAGACTACAGCACAGCACCACACCAGGAACCCAGCCCAGCCAATCCCAGCAGCACAGCCCCGCACCAGGAACCCAGCCCAGCCAATCCCAGCAGCACAGCCCCGCACCAGGAACCCAGCCCAGCCAATCCCAGCAGCACAGCCCCGCACCAGGAACCCAGCCCAGCCAATCCCAGCAGCCCAGCAGCACAGCCCACGATGGACCACAATCACCTACCACCCAGAGTGGGGAGACTGAAGAGGTGTAGGGTGAAGCTGCCCCgagacgctgatcttgggtcagcgTCTAGGGTTGTGCCTTTCAGATTATAATACACAAGGTTAAATGGACACGGGAGGCCTGATCATAGATCAGCACTCCCACTCTGAGGTGCTTTATGAACAGAGAGGAATTGACAGGTTTGGTCAGAAAGTTCCAGCTAGACTATCAGAGGGCAAGGTAAAGTTATTATCATATTGCTTAAACCTATCAAATCATTTCAGATCGCAACAGATGTCTAGAGGGAAGGGGCTAAGTGATTGTTTCTGGACAAGGagcctctgtctccccctccctctctccagatcACTGTCTCTTacactctctatctccctccctcgccAGATCACTGTCTCTAcactctttatctccctctctccagatcCCGGTCTCTacact

Function

GO: NA

KEGG:

id description
K24486 FNDC4_5; fibronectin type III domain-containing protein 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1803505 lncRNA downstream 2505 67401448 ~ 67404807 (-) False G1576222
TU1803507 lncRNA downstream 2505 67401448 ~ 67404807 (-) False G1576222
TU1803508 lncRNA downstream 2505 67401448 ~ 67404807 (-) False G1576222
TU1803509 lncRNA downstream 2505 67401448 ~ 67404807 (-) False G1576222
TU1803511 lncRNA downstream 2505 67401448 ~ 67404807 (-) False G1576222
TU1803595 lncRNA upstream 34092 67475459 ~ 67475901 (-) False G1576288
TU1803596 lncRNA upstream 34092 67475459 ~ 67476466 (-) False G1576288
TU1803597 lncRNA upstream 34092 67475459 ~ 67476466 (-) True G1576288
TU1803600 lncRNA upstream 38630 67479997 ~ 67480440 (-) True G1576290
TU1803605 lncRNA upstream 53964 67495331 ~ 67495687 (-) True G1576294
XM_021572767.2 mRNA downstream 58328 67341388 ~ 67348984 (-) True srfbp1
XM_036953582.1 mRNA downstream 70116 67325870 ~ 67337196 (-) False LOC110496729
XM_036953583.1 mRNA downstream 70116 67325870 ~ 67337196 (-) True LOC110496729
XM_021572761.2 mRNA downstream 294729 67108578 ~ 67112583 (-) False sox4a
XM_036951080.1 mRNA downstream 348763 67058124 ~ 67058549 (-) False LOC118941008
XM_036951081.1 mRNA upstream 102194 67543561 ~ 67558111 (-) True LOC118941009
XM_021572773.2 mRNA upstream 220758 67662125 ~ 67668116 (-) True eif3i
XM_036953589.1 mRNA upstream 228721 67670088 ~ 67684247 (-) False txlna
XM_036953590.1 mRNA upstream 228721 67670088 ~ 67684423 (-) True txlna
XR_005037542.1 mRNA upstream 257809 67699176 ~ 67702000 (-) False LOC118941210
TU1803205 other downstream 203825 67203201 ~ 67203487 (-) True G1575977
TU1803115 other downstream 348639 67058177 ~ 67058673 (-) True LOC118941008
TU1803003 other downstream 537113 66869891 ~ 66870199 (-) True LOC118941007
TU1802980 other downstream 580435 66826582 ~ 66826877 (-) True G1575774
TU1802944 other downstream 596846 66803424 ~ 66810466 (-) True LOC110496725
TU1803844 other upstream 473821 67915188 ~ 67955212 (-) True G1576491
TU1804691 other upstream 1180881 68622248 ~ 68626119 (-) True LOC118941211
TU1805395 other upstream 1307245 68748612 ~ 68787686 (-) True G1577745
TU1805790 other upstream 1871519 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 1871519 69312886 ~ 69315007 (-) False G1577996

Expression Profile