RNA id: XM_036953589.1


Basic Information

Item Value
RNA id XM_036953589.1
length 3366
RNA type mRNA
GC content 0.49
exon number 12
gene id txlna
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67670088 ~ 67684423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATTACCTAAAGCTTATCCCAACGAATTAATAATGACTGTGCCATATGAGGCATTTCATCATGAAGAAACAGGACACGGAAGAGTCGGCCACGCAGGGCAGTGACGCGGCTCCACCACCTGGcactggagagatggagggaagcaCAGCGGCAAAAGACGTTACAGAGACCAGTAGCCCAAAAGACGTTATAGATACTGTCAGCCCTAAAGAGCCAGACAGGCCTTCACAGATTGATGGGGCTGAAAGTTCAGTGGGTGAGGTGTCTGCCGTTCCCAACACAGCAGAGTCTGCAGCTCTCCCCGCGGTCCCACCTGTAGAAGAGCCTGCTTTCGTCCCAGTCTCTACTATAGCAGACCCCATCCCAGTCTCTACTATAGCAGACCCCGTACCCGTCTCTACTGCAGCGGAGGGGGTGTCGTCTCAGTGTGACATGGCTGAGGAGCTGAGCCGCCAGCTGGAGGACATCCTCAACACCTACTGTCTGGAGGACAACGGGGAAGACGGGGTTAACCTGCCCAACGGCCAATCACACGGCCCTGTGCTCAACGGCCTGGCCAATGAGAAGGAGCTGGACGTGAAGCCAGGGGATGTCAAAGTGAACGCCTGCGGAGCGGAGAAGGCAAAGACTCAGGACAAGAAGAAGGTGAAGGGTCTGGGTAAAGAGATCACCCTGCTGATGCAGACCCTGAATACTCTGAGTACACCAGAAGAGAAACTGGCAGGCCTCTGTAAGAAGTATGCTGATCTGctGGAGGAACAGCGGAACAGTCAGAAGCAAATGCGGGTCCTCCAGAAGAAACAGTCTCAGCTGGTGCAGGAGACAGACCACCTAAAGAAGGAACACAGCAAGGCTATCCTGGCACGCAGCAAACTGGAGTCACTCTGTAGGGAGCTGCAGAGACACAACCGCACACTCAAGGAGGACGGGACACAGCGTGCAcgcgtggaggaggagaagaggaaggtggTGACATCACACTTCCAGgtGACTCTGAATGACATCCAGGCCCAGATGGAGCAGCATAACGAGAGGAATGCCAGTCTGAGGCTGGAGAACTCTGAGCTAGCAGAGAAGCTCAAGAAACTCATCCAACAGTACGAACTACGAGAGGAGcacattgacaaggtgttcAAGCATAAGGATCTGCAGCAACAGTTGGTGGATGCGAAGCTACAACAGGCTCAGGAACTGCTCCTGGAGTCTGAGGACCGACATCACAGAGAGAAGGACTTTctGTTGAAGGAAGCGGTCGAGTCTCAGAGGATGTGTGAGCTGATGAAGCAGCAGGAAGTCCATCTCAAACAACAGCTGTCCTTATACACAGAGAAGTTTGAGGAGTTCCAGACTACTCTGTCCAAGAGCAATGAGGTGTTCACCACTTTCAAACAAGAGATGGAGAAGaTGACGAAGAAGATCAAGAAGCTGGAGAAGGAGACGACCATGTATCGTTCCAGGTGGGAGAGCAGCAACAAGGCCCTGCTGAACATGGCTGAGGAGAAAACTCTGCAGGACCGTGAGTTTGACAGCCTCCAGGGGAAGGTAGGGAAGTTGGAAAAGCTTTGCCGGGCGCTGCAGAACGAACGCAACGAACTCAGCAAGAAGGTTCAGGGCCTGAGCACCGGCCCCGGGGACAACAGCCCAGGGGCTGAATCCCCTTCCCTACCCCCCACAGACTCCCAGGAGCCTAGCCCAGACCCCGACACCACCACCCCTAGCTCCCCAATACCCTGCTCGCATGGCTGCCACTGCGGCCCAGAGTTGGACACTGAGAACCAGGCCTGTGCAGCCACCCTCACTGCCCAGGAATGAGACCTCTTGCCTGGGCAACACCGCTCAGTCTCCCCTTCACCGACCGATTACCAACTACCAGCCTGCAAGCCAAGCCACTATTAATGTGGGAGTTAAGAGTGTGGGTCTGTATGATTTTCCCCCAGAGTTAGATAAAGTTGtcccctaaccacagatctaggatcagattccctTAGGTCCAACTTAAAACCAATAGAGCGGTGCAAGAACATCTGACCCTGGATCTGTAGTCAGTTAGCAGCTTCTACCTACTCTGGTGGCTCCTGGAGAGTtgaaggtgatgatgatgatggtgtcaGTCAGGGACGATTATTGGAGGTTCTTCATcctgtgtgttttgttttttggTCTTTTTCTTTTTACATTTTCCTTTTGAGAACTCTAGCACACAAATGTTCATGGAAATCACAGCTTTTATGTGAGGCAAAGCAAGCTTTAAAAAAAgaggcttcatcccaaatggcaccctattccctatgtagtgcactactttagaccagagccctatggaaccctatttcctacatagtgcactactttagaccagagccctatggaaccctattccctatgtagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactacttttcaccagagctcTGTTGGAATAGTGTGGTATTTGGGACACTGGCTGCTTAGGAAGGTAAATCTACAGTAAAGATGTTGGAACAGGAGGGTTTttcgtgtgtgtgcttgtctccaTCAGTCCCTCTTtttcgtgtgtgtgcgcgtgtctgtcAGTCATAGAGGTTAAGATATAGTGAATCTGCAAATGTACGGCCACAGTTAAACTTGAATTCTAggatttatatttttttaagttgAACACACTGAAAGCATGGCTAACTCATCAGCGCATGTAGGAATCACCTGACCTTTCCTTCGGCACAGAGAGCAGAGTGTATAATATCTAGGTTGGGGATAATCTTGCAAAAGGGTCACTTTCGTTCCATTTTAGACGTCCTTGTTTAGGTCCAGAGCATCAAAACACTTAAAGGGATGGTGTAGATATTCTTTATGAATCTTACAGTATCGTTGGATCCACACAAAATGCTCTTAGACCACGAGGAACCAACCCGGAagcaaatggggggggggggggggtgaaatgaGGAGGGACCTGAGCTGAATTTGTCCAACAAGAAAAATTGTTTTCATTGCTTAATGTTTTCCGCTGCAATAATGTTTTGTTACGGTTTGTACTAATGAATACACCCGGAAGATTAGACAAAATTGCCTTGTTCTTTTCGTTTTGGTTTTGGGTTGCTTCTTTTATAGCGGTGTTGGGTTTTTTAATTCCGTTCAATTGTCCTCAATAGTTTTCAATTGGAATTGACCTCGACTCTGCTTAATATCATGCTGTACTCTGGACCTCCTTTATGTTGCAAAGACTGCACAGCAGAGTTTATACATTGTGTTTGTTTGATATGCaactgtttaaaaaataaatatatatatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1803624 lncRNA downstream 42482 67531804 ~ 67627606 (-) False G1576309
TU1803623 lncRNA downstream 45046 67610907 ~ 67625042 (-) True G1576309
TU1803642 lncRNA downstream 106367 67562905 ~ 67563721 (-) True G1576324
TU1803620 lncRNA downstream 139167 67530532 ~ 67530921 (-) True G1576308
TU1803612 lncRNA downstream 156258 67513615 ~ 67513830 (-) True G1576301
TU1803692 lncRNA upstream 5792 67690039 ~ 67693497 (-) False G1576359
TU1803696 lncRNA upstream 5792 67690039 ~ 67693497 (-) False G1576359
TU1803694 lncRNA upstream 6683 67690930 ~ 67693497 (-) False G1576359
TU1803693 lncRNA upstream 8379 67692626 ~ 67698921 (-) False G1576359
TU1803695 lncRNA upstream 10632 67694879 ~ 67699105 (-) True G1576359
XM_021572773.2 mRNA downstream 1972 67662125 ~ 67668116 (-) True eif3i
XM_036951081.1 mRNA downstream 111977 67543561 ~ 67558111 (-) True LOC118941009
XM_036953587.1 mRNA downstream 228721 67407312 ~ 67441367 (-) True fndc5b
XM_021572767.2 mRNA downstream 321104 67341388 ~ 67348984 (-) True srfbp1
XM_036953582.1 mRNA downstream 332892 67325870 ~ 67337196 (-) False LOC110496729
XR_005037542.1 mRNA upstream 14929 67699176 ~ 67702000 (-) False LOC118941210
XM_036953591.1 mRNA upstream 18294 67702541 ~ 67723231 (-) False kpna6
XM_036953592.1 mRNA upstream 18294 67702541 ~ 67729353 (-) False kpna6
trnay-gua-8 mRNA upstream 124259 67808506 ~ 67808593 (-) True trnay-gua-8
trnay-gua-9 mRNA upstream 125732 67809979 ~ 67810066 (-) True trnay-gua-9
TU1803506 other downstream 228112 67401448 ~ 67441976 (-) False G1576222
TU1803513 other downstream 228112 67401448 ~ 67441976 (-) False G1576222
TU1803517 other downstream 228112 67401448 ~ 67441976 (-) True G1576222
TU1803205 other downstream 466601 67203201 ~ 67203487 (-) True G1575977
TU1803115 other downstream 611415 67058177 ~ 67058673 (-) True LOC118941008
TU1803844 other upstream 230941 67915188 ~ 67955212 (-) True G1576491
TU1804691 other upstream 938001 68622248 ~ 68626119 (-) True LOC118941211
TU1805395 other upstream 1064365 68748612 ~ 68787686 (-) True G1577745
TU1805790 other upstream 1628639 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 1628639 69312886 ~ 69315007 (-) False G1577996

Expression Profile