RNA id: XR_005037542.1


Basic Information

Item Value
RNA id XR_005037542.1
length 2545
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC118941210
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67699176 ~ 67702000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggcgggagagaggcagggtgggagaggaggaagagaggaggctgggGAGTGCCGTAATTTAGGTCTTTAGAAAATCTAACAATATATAAGAATTTCATGTCCCATTGAGAAGAGAAAGTACAGGGGGCAGAGTTTATCACATATTAGATGGTATAGTTGAGGGGGCAGAGTTTATCACATATTAGATGGTATTGCTCAGGGGGCAGAGTTTATCACATATTAGATGGTATTTTTCAGGGGGCAGTTATCACATATTAGTGGCGGTGAGGTAATACCATCTATCATCTGGTTGACGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATATCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTAGGCGGTGAGGTAATACCATCTATCATCTAGTAGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGACGGTGAGGTAATACCATCTATCATCTAGTAGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTAGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCTATCATCTAGTTGGCGGTGAGGTAATACCATCATCTATCATCTAGTTGGCGGTGAGGTAATAAATGGTATTATCTAGTTGGTGGTGAGGTAATAGTGTGgttattgagtgtaaggttaCATCTGATATCAGTTGTTGTTTTTGCGTTCTACTGTTGAATCCTCCAACCAGGCTTTCTGTAAAACGGGAATTTGAGGTAAGTTACTGCAACTCTGCCGTGTTTAAAAGAAATGGGAATGAGAACTTGTAATGTTCCATGGGTCATTGTGATGGGGATAAGTACTAGGTATCGTTGTGATGGGGATAAGTACTAGGTATCATTGTGATGGGGATAAGTACTAGGTATTGGTGTGATGGGGATAAGTACTAGGTATCGTTGTGATGGGGATAAGTACTAGGTATCATTGTGATGGGGATAAATACTAGTTATCATTGTGATGGGGATAAGTACTAGGTATCGTTGTGATGGGGATAAGTACTAGGTATCATTGTGATGGGGATAAGTACTAGGAATCATTGTGATGGGGGATATGTACTAGGTATCATTGTGATGGGGATATGTACTAGGTATCATTGTGATGTGGATAAGTACTAGGAATCGTTGTGATGGGGATAAGTACTAGGTATCGTTGTGATGGGATAAGTACTAGGTATCGTTGTGATGGGATAAGTACTAGGTATCGTTGTGATGGGATAAGTACTAGGTATCGTTGTGATGGGATAAGTACTAGGTATCGTTGTGATGGGATAAGTACTAGGTATCGTTGTGATGGGATAAGTACTAGGTATCGTTGTGATGGGGATAAGTACTAGGTATCGTTGTGATGGGGATAAGTACTAGGTATCATGATGATGGGGATAAGTACTAGGTATCATTGGTATAGTAATATGTACTAGGTATCATGATGATGGGGATAAATACTAGGTATTGATGTGTATTATTCTAGAGAGTCTCTGGTCAGAGGTAGAGGCCACTCGTTTTGACACCTAGAGTGTCTCTGTGGTCAGAGGTAGAGGCCACTCGTTTTGACACCTAGAGAGTCTCTGGTCAGGTAGAGGCCACTCGTTTTGACAGGAGCCACGTAGAGAACCTCTATCTCGGACAGCGTGTCATTGGAAATGAGAACGTAGATCTAACGACAACCGGGGTTTGGCAAGGGATACGTCTATTCATTTAGACCGTGACGAACCTAACCGCGGAAATTCTAGTAAAGAGATGTATTTGCACACACACTTCATGCATACATACACCAGAAGACAGTACACTGTACACACGGACGAGTGTTACACAACAAGGGAAAACAACTTCCATAAtccagtttatttttatttatttttttgaatgaaCATGGGTTTTCCTTCTGTGTTCTATTTCTACAAGGTTTTGGTTTTCTGATGCACTATGTTCATTCAGTATTTTTTAAATTTGCGTCGTTTTGCCACTTCCTGTTAGGTACTTTTTGAAGTTATGCACTTTGAAAAAAACACGTTTTAAATTCAATAACCCACAGTGCATTGCTCCTATTGAAACGATTAGATGAATACTGGAGGTGGAAGGTATGACACAAAGGATTATTAAAGTGAAACAATCAAATTCACAGCATCATTTCAtacctctctcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1803695 lncRNA downstream 71 67694879 ~ 67699105 (-) True G1576359
TU1803693 lncRNA downstream 255 67692626 ~ 67698921 (-) False G1576359
TU1803692 lncRNA downstream 5679 67690039 ~ 67693497 (-) False G1576359
TU1803696 lncRNA downstream 5679 67690039 ~ 67693497 (-) False G1576359
TU1803694 lncRNA downstream 5679 67690930 ~ 67693497 (-) False G1576359
TU1803699 lncRNA upstream 388 67702388 ~ 67702902 (-) True kpna6
TU1803705 lncRNA upstream 3255 67705255 ~ 67705540 (-) True G1576367
TU1803712 lncRNA upstream 30647 67732647 ~ 67732872 (-) True G1576374
TU1803713 lncRNA upstream 30949 67732949 ~ 67733306 (-) True G1576375
TU1803721 lncRNA upstream 40459 67742459 ~ 67742822 (-) True G1576383
XM_036953590.1 mRNA downstream 14753 67670088 ~ 67684423 (-) True txlna
XM_036953589.1 mRNA downstream 14929 67670088 ~ 67684247 (-) False txlna
XM_021572773.2 mRNA downstream 31060 67662125 ~ 67668116 (-) True eif3i
XM_036951081.1 mRNA downstream 141065 67543561 ~ 67558111 (-) True LOC118941009
XM_036953587.1 mRNA downstream 257809 67407312 ~ 67441367 (-) True fndc5b
XM_036953591.1 mRNA upstream 541 67702541 ~ 67723231 (-) False kpna6
XM_036953592.1 mRNA upstream 541 67702541 ~ 67729353 (-) False kpna6
trnay-gua-8 mRNA upstream 106506 67808506 ~ 67808593 (-) True trnay-gua-8
trnay-gua-9 mRNA upstream 107979 67809979 ~ 67810066 (-) True trnay-gua-9
trnay-gua-10 mRNA upstream 109452 67811452 ~ 67811539 (-) True trnay-gua-10
TU1803506 other downstream 257200 67401448 ~ 67441976 (-) False G1576222
TU1803513 other downstream 257200 67401448 ~ 67441976 (-) False G1576222
TU1803517 other downstream 257200 67401448 ~ 67441976 (-) True G1576222
TU1803205 other downstream 495689 67203201 ~ 67203487 (-) True G1575977
TU1803115 other downstream 640503 67058177 ~ 67058673 (-) True LOC118941008
TU1803844 other upstream 213188 67915188 ~ 67955212 (-) True G1576491
TU1804691 other upstream 920248 68622248 ~ 68626119 (-) True LOC118941211
TU1805395 other upstream 1046612 68748612 ~ 68787686 (-) True G1577745
TU1805790 other upstream 1610886 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 1610886 69312886 ~ 69315007 (-) False G1577996

Expression Profile