RNA id: XM_036953592.1


Basic Information

Item Value
RNA id XM_036953592.1
length 3460
RNA type mRNA
GC content 0.49
exon number 12
gene id kpna6
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67702388 ~ 67729353 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTATTAAATTTGTCATCTCTCGCCATCCGTATTTCTCCGACGACATATTGTTTGTGAGGAGCAAATTCTAAAAAGCAAACTGGGAAAGAGGATTACAATTTATTTCTCTCTAAACACAAGAAGTATCTGTCAtttaagataaaaaaaaatggagccgtcagccagtccAGCGAAGGATAACCACAGGATGAACAGCTACAAGAACAAAGCCCTGAATGTGGAGGAGATGAGacgcaggagagaggaggagggtgtccAGCTGAGGAAGCAGAAACGAGAACAACAGCTGTTCAAGAGGAGAAACGTTGACATGTTGAACGAGGAAGGAGTCATGTTTGAGAGTCCACTGGTCGACTCGTATGTCACCTCCACAGCCACAGAGGAAGGAGTCCTAACTAAAGACCTGGTAGAGATGCTCTTCTCAGAGGACCCAGAGCTCCAACTCGCGACAACACAGTCATTCAGGAAACTACTGTCCAAAGAACCCAATCCACCTATTGACGAGGTCATCAACACCCCAGGCATTGTAGAGAGGTTTGTAGAGTTCCTGAAGAGGAGCGTCAACTGCACATTACAGtttgAGGCAGCCTGGGCCCTGACCAACATAGCATCGGGTACATCCATGCAGACTAACATAGTAATCGAGGCAGGAGCAGTACCCATCTTTATAGAACTACTCAACTCGGACTTTGAAGATGTTCAGGAACAGGCGGTGTGGGCGTTGGGTAACATAGCAGGGGACAGTCCAGTGTGCAGAGACTATGTACTCAACTGTAATATCCTGCCACCACTGTTAATGCTTCTGACTAAATCCACCAGACTGACAATGACCAGGAATGCAGTGTGGGCTCTGTCTAACCTGTGCAGGGGGAAGAGCCCCCCACCTGTATTTGAGAAGGTGTCCCCTTGTCTGCAGGTCCTGTCTAGACTGTTGTTCAGCAGCGATTCAGATCTGTTAGCAGATGCCTGCTGGGCTCTGTCTTACCTCTCTGACGGACCCAACGAGAAGATCCAGGCTGTCATCGACTCCGGCGTCTGCAGGCGCCTCGTAGAGCTGctcatGCACACGGACTACAAGGTGGCGTCTCCTGCTCTGAGAGCAGTGGGGAACATCGTCACGGGAGACGACATCCAGACCCAGGTGGTGTTGAACTGTTCAGCCCTGCCCTGTCTGCTCCACCTGCTGAGTAGTCCTAAAGAATCCATCCGGAAAGAAGCCTGTTGGACCGTCTCCAACATCACCGCTGGCAACAGGGCTCAGATACAGACGGTGATTGATGCCAATATCTTCCCTGTGCTGATCGACATCCTGCAGAAGGCAGAGTTCAGAACCAGGAAGGAAGCAGCCTGGGCCATCACTAACGCCACCTCTGGAGGAATGCCTGAACAGATCAGgTACCTGGTGAACCTGGGCTGTATCAAGCCTCTGTGTGACCTGTTGACCGTGATGGACAGTAAGATAGTCCAGGTGTCTCTGAACGGTCTGGAGAACATTCTGAGACTGGGAGACCAAGAGGCCAAGCAGGATGCAGGACCCAGTGGTACCGGCATCAACCCCTACTGCTCTCTCATAGAGGAGGCCTatggtcTGGATAAGATCGAGTTCCTTCAGAGCCATGAGAACCAAGAGATCTACCAGAAGGCCTTTGATCTGATAGAGCACTACtttggagtggaggaggaggaccagaaCCTGGCTCCTCCGGTGGACCAGGCCAATCAGCAGTTCCTCTTCCCCCAGCAGGAGGCACCCATGGAGGGCTTTCAGCTATAacgccctccctgtcctctggTTCTCATCTGGTTCACCAACCATCACTCATACCCATGGAGGAGTTTCAGATGAAACATCCACCCCCTTATCCTCATACCCATGGAGGAGTTTCAGATGAAACATCCACCCCCTTATCCTCGCCCCATGGAGGAATTTGGCATATAATCAGTCCCCTCCatgtcccctccaccctccatgtCCAACCATTGCCCCATCCTCTATACCCAGCCTGAGCCCAAGGGGCTAGTTTTAGCCCCAACAGATGAAGGGTGGAGGTGACACATCCCCCACCTGTGAAGCAATGACCTTATCCACCTTATATCCTCCACCCCCATGGAAGGTAGAGCGttgtcctctccctcctttcccatGGAAGGCTTTACAGATTTAACTATCCAACCTATATTTACAGTCTTTGAGCTGGCTTTACCTACCCTAACAGATCAGACGCTTCTAACGGAATGCCACGTCTCGGCGGTAGAGCCAATAGGAGACCTGAACTCAACCCGCTTGACCTGACGATAAAACAAAGCTCTTCCTGATCAGTGATCACACAACCAGGGCCGAGGTTTGGTCCAGTCCAGGTTTCGGCAATGCACAGATACAATAATAGATACACCGCCAGTGCTGTTGATACCCTGATTCTTCTGACCGTAACGGCGTTTTGATTTGGTTTGGTTATTAGTGCTTCCTGTCTGCCCATAGGGGATGTCCTCCTTCGGGATGTAGGGATTTGATAGGTCAAACCTGACCAGTGGGAgagatgtgttttttttatttaatttttacccAGCTCCTTTACGACAATTATCTTCCTAGTCCTTGTCTGTTTCCCCTCGTTTTAGCTTTTATCaaccctgtgtttctctctgtgactTGTTCTAAAACGTACTGCATCTACATGCACCACCTGAAGACTGAAGTGTCCCAGGACAGAAGaatggcctctctctctactgttaaCAATAAAACAATCCGGATGTATTCTCAACTCAGAGGCCAAACTCTCATTCGTATTGGTTTCTGTCTATATCGGACATACAGGGTTCCACTAAGCAATTCTGGGGATTCTTAGGAATTCTAGAACTATGGTTTGAAGTGTAGAGCCAAGGTTCTCCCCTTCTCGAACTAACTGTCCTTtctctacaatgttttttttttttttgaacttTTAGTTTTGTGCTTGTGGAGGAGGAGCATGTTGGGATCTGAATCGTAAAATCAGGAAACCGTCTGAGGCTAAGGGAGGATGTTGATTggggaagggaaggggggggggggggggggggggggctgtgaggGGGAAGGGAGTATAGGTGTGTGGGGATATTGAAAGATATATAAAGTGACCTAGGTTACTAGCTTGATCCGAGCTTGATTATAACTAGCAATATAATGTTTGTTGTGTTGCCGTGTTCTTAGGTTTGAATTATGAAGTGATTGTAAATGTTTAAACAGCACACCGCTAAGGGAGGGGGGGGCGCTAGCCATAGCTCGAGAATATGTGATTGTCCAAACCAAACGTATTTTTACATATAAATACAGACACTGTCAGATCTCCATTTGGCTTTCGAGGGATCGTTGCTCttttatatagggattagggatGATTCCTTACTGGGAAAAACACGTGTGCCTCAGTCAAACCTTAGTCAGATGGTAACATCagatttatgtaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1803698 lncRNA downstream 578 67699473 ~ 67701963 (-) True LOC118941210
TU1803695 lncRNA downstream 3436 67694879 ~ 67699105 (-) True G1576359
TU1803693 lncRNA downstream 3620 67692626 ~ 67698921 (-) False G1576359
TU1803696 lncRNA downstream 9044 67690039 ~ 67693497 (-) False G1576359
TU1803712 lncRNA upstream 3294 67732647 ~ 67732872 (-) True G1576374
TU1803713 lncRNA upstream 3596 67732949 ~ 67733306 (-) True G1576375
TU1803721 lncRNA upstream 13106 67742459 ~ 67742822 (-) True G1576383
TU1803727 lncRNA upstream 21916 67751269 ~ 67751543 (-) True G1576388
TU1803733 lncRNA upstream 35335 67764688 ~ 67765064 (-) True G1576394
XR_005037542.1 mRNA downstream 541 67699176 ~ 67702000 (-) False LOC118941210
XM_036953590.1 mRNA downstream 18118 67670088 ~ 67684423 (-) True txlna
XM_036953589.1 mRNA downstream 18294 67670088 ~ 67684247 (-) False txlna
XM_021572773.2 mRNA downstream 34425 67662125 ~ 67668116 (-) True eif3i
XM_036951081.1 mRNA downstream 144430 67543561 ~ 67558111 (-) True LOC118941009
trnay-gua-8 mRNA upstream 79153 67808506 ~ 67808593 (-) True trnay-gua-8
trnay-gua-9 mRNA upstream 80626 67809979 ~ 67810066 (-) True trnay-gua-9
trnay-gua-10 mRNA upstream 82099 67811452 ~ 67811539 (-) True trnay-gua-10
trnay-gua-11 mRNA upstream 83572 67812925 ~ 67813012 (-) True trnay-gua-11
trnay-gua-12 mRNA upstream 85045 67814398 ~ 67814485 (-) True trnay-gua-12
TU1803506 other downstream 260565 67401448 ~ 67441976 (-) False G1576222
TU1803513 other downstream 260565 67401448 ~ 67441976 (-) False G1576222
TU1803517 other downstream 260565 67401448 ~ 67441976 (-) True G1576222
TU1803205 other downstream 499054 67203201 ~ 67203487 (-) True G1575977
TU1803115 other downstream 643868 67058177 ~ 67058673 (-) True LOC118941008
TU1803844 other upstream 185835 67915188 ~ 67955212 (-) True G1576491
TU1804691 other upstream 892895 68622248 ~ 68626119 (-) True LOC118941211
TU1805395 other upstream 1019259 68748612 ~ 68787686 (-) True G1577745
TU1805790 other upstream 1583533 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 1583533 69312886 ~ 69315007 (-) False G1577996

Expression Profile