RNA id: XM_036953595.1


Basic Information

Item Value
RNA id XM_036953595.1
length 3014
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110496744
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 68332248 ~ 68355140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCATCCCGGGACAATGTGACCCTGCACGGATCACCTTCATTAGCTCGTCGGAAACCATTACGAAGTTTGATCGGTCCACGACGTGCACGGTTGAGTGACCGTCAGCTGGTGTAGCTTGCCACAGCAGCGGGAgATGTCAGGATGGAGTGTTGTGAGGTGGAGCCACGCTATACCATCGAGCAGATCGACCTCCTTCAGCGTCTCCGTCTCTCAGGGATGACCAAGCCACAGATCATCCAGGCCTTGGAGTCCCTAGAGCGGCTAGAACCCGACCATCGCCCCCCGTACTGCAACGACACCCACGCCGCCAACCCCACAACCAACACTACCCCTACCACAGCCTCCGCCCcggccccctcctcctcttcctcctcctcttcttcctccctctccttggCATCCGCCACAACGCAGACCCCTGGGCTAGACGGCGCCTCACTGTCGCCTAGCAACAGCTATGAGGCCTCTCCCCCACCGCTGTACACACATGGGGTTGGAGTTCAGAAGTCGTTTAGCTATGACATCATGGCAGAGGAGGACTGGGAtctggaggagaaggtggaggagtacatgagGAGGGACAGTAACCTGGTGAAGGAGGAGATTAAAACCTTCCTCAACAACCGCAGGATCTCCCAGGCCATCGTGGGACAGGTGACAGgTATCAGTCAGAGCTATATCTCTCAGTGGTTGCTGCAGCAGGGCTTGGAGATGAGTGACTCCAAACGCAGAGCCTTCTACCGCTGGTACCTGCTTGAGAGAAACAACCCAGGGCTGAGATGGAGTGAAAGCCAGCACGGCCCGGCGGGTCTGGGCCCAGGGCTCGGTGGTCTCGGCCAGGGGCTCTGTGGTCTCGGCCAGGGGTTGGGCCAGAACCTGGGCCAGAACCTGGGCTCTGGACCCGccaggggaggggacagagacgTCACAGGGATGGTGGGAAACGCCACTACGGGCGCCACGGCCGCGGCCACTGCCTCTACCACctggggcagacagagagagctgcTGATGCACCTCCTCCCATGGTACACTGCTGCCGCACAGCAGGCACAGCCAGGTGCTACCCTGTCGATGCGCTCCCTGGTGAAGGAGGAGCCTGATTGGAGGACGGGGGTCAGCCCCGGGGAGAGGGGCGGGGTGGCGGGCGGTCCTCTGAGGCTGCGGAGGGGAAGCAGGTTCACCTGGAGGAAGGAGTGCCAGTCAATCATGGAGAGTTTCTTCATGGAGAACCAGTACCCTGATGAAGCGAAGAGAGAGGAGATCGCTAACGCCTGCAACTCAGTCATCCAGAAACCTGGATGCAAGCTGTCCGAGTTTGAGCGTGTCACGGCTCTGAAAGTGTACAACTGGTTCGCCAACCGCCGGAAGGAGATGAAGAGACGGGCTAATATAGAGGCAGCCATCTTGGAGAGTCATGGTATCGAGGTTCCAAGCCCGAGCTGTCAATCCAACGGGGAGGAGTTGGAACCACAGGACTTCACAGAGCAAGTGAATCAACGATTCATAGAGCAGGAAGAGATATCTTCCAGGAAGGACCTTGATCTACAAGACACCTCCTCATTGGCTGCCGTCGAGGTCCTTCCCCCTCCAAGCCCCACCTCTCAGGTTCTGGAACAGAAAGCTGACGAAtcgaagagagagacagtggacgAGGAGTGACCAATGGGAGAGCGTGGATTTGAATATATAACGGCAtattaaaaaacatatatattaatAATAGATGCTCTGAATGTCTTCAGGGGTTATGACAAGTCAGTGCGTTAATTGTTGAAAAGGGTGCTATAGCTCTCGGTGCCTCTAGTGGTAGGGAGGCCACTGTGTCTATACAGTAATCATGCTTTACAGTAACGTCGAtatttatctctatctctccatgtAGTGCATTCCATGACAGTCTTAAATGAAAGACGCCTCCTTATAAAGAACAGGGGTCTAAGTGGTTAAATCCTCTAGAAGCTCAACAGCCTTTTAACATTTTCTTTGCTACTTtactttttaattattattttttaaattttttaaaggTTTTGACGAGTGGTTGCGTAATAATGAACTGGAGTGGGAACTGAATGTTTTGAACCTGCAGGTCAGGTGTGTTTTGATGATGAGGTGAAGACGGGTGTGTTTGGTCGAGGCCGAGTTGAACTTTTGGTGTGACGATAAGTGTTTCCGATTTAATATCAGCCTTCTCTGCTAGCTTGAATGTCTTTGACCCGATCTTAGTAAACTTGTTAGACTTTGGGATCAATCAATCAAGTAGTCCGGGTCAGTGTTATTAGGAGTCCAACCCTGAGGGACAAATGGAATCTCAGGTAAACCCAAAGATGGTGGATGATGACGAATCAtcacgtttctctctctctaataagcTTCGTTCAAAAGGAATGTTTCGTATCATATGTTGACTGTTTCTGCGACGACAACAAAAAGCATCTGTATTCTGTCTTCATTGTAATGTCAGCAAGCCAAACTAACACGGGAGTTTCATTTATTACGCTTCCTTATGGTCGTCTTTCCTCAACAAATGTTGATGATCAAAGGAACATTTTATTATGCATAAGTAGCAAAACTAATAGTAATGAGTTACTCATGTCCCTTTTCTCTTATCGACATGAACCACTAGTCCGCCGAACCCATCGAGAAGCTACTCAAAAGTCTAGTCTGGTttgggtttaaaaaaaataaaaagagatcTTCTAGGCcacatattattagtattattattattattattattattattattaaagttGTTAATCATGACTTGTAAAATGTATCTGTGTTATAAGCAGCACCTTCTTCTAGAATAAGCTCATTATATATGTACTGAGTGACTGAAAGCTGCCTTTCCTGCTCAATTCCTTTTAGTTCAGATAGTTCCAAGAAGAAGAACTTAATGTGCTTTCATGTTCATTGGACATCAGCTGTGTGCTcctggtcattaaaaaaaaatgattgCTAGCTGATAATGTTACAAGCATGACTATAAATGAACATGAAAGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1804378 lncRNA downstream 84884 68245579 ~ 68247364 (-) False G1576954
TU1804380 lncRNA downstream 84884 68245579 ~ 68247364 (-) True G1576954
TU1804374 lncRNA downstream 85775 68245579 ~ 68246473 (-) False G1576954
TU1804345 lncRNA downstream 132268 68199345 ~ 68199980 (-) True G1576928
TU1804327 lncRNA downstream 166049 68165841 ~ 68166199 (-) True G1576911
TU1804493 lncRNA upstream 70359 68425499 ~ 68426564 (-) True G1577044
TU1804545 lncRNA upstream 148718 68503858 ~ 68504111 (-) True G1577096
TU1804550 lncRNA upstream 150420 68505560 ~ 68505774 (-) True G1577101
TU1804553 lncRNA upstream 154219 68509359 ~ 68509570 (-) True G1577104
TU1804573 lncRNA upstream 180858 68535998 ~ 68536205 (-) True G1577123
XM_036953593.1 mRNA downstream 36362 68275439 ~ 68295886 (-) True khdrbs1b
trnay-gua-61 mRNA downstream 438101 67894060 ~ 67894147 (-) True trnay-gua-61
trnay-gua-60 mRNA downstream 439572 67892589 ~ 67892676 (-) True trnay-gua-60
trnay-gua-59 mRNA downstream 441044 67891117 ~ 67891204 (-) True trnay-gua-59
trnay-gua-58 mRNA downstream 442518 67889643 ~ 67889730 (-) True trnay-gua-58
XM_036953599.1 mRNA upstream 44844 68399984 ~ 68469327 (-) True LOC110496749
XM_036953600.1 mRNA upstream 187159 68542299 ~ 68602274 (-) False nt5c1aa
XM_036953601.1 mRNA upstream 187159 68542299 ~ 68602274 (-) True nt5c1aa
XR_005037544.1 mRNA upstream 266873 68622013 ~ 68624627 (-) False LOC118941211
XM_036953602.1 mRNA upstream 271736 68626876 ~ 68699108 (-) True hpcal4
TU1803844 other downstream 377036 67915188 ~ 67955212 (-) True G1576491
TU1803506 other downstream 890272 67401448 ~ 67441976 (-) False G1576222
TU1803513 other downstream 890272 67401448 ~ 67441976 (-) False G1576222
TU1803517 other downstream 890272 67401448 ~ 67441976 (-) True G1576222
TU1803205 other downstream 1128761 67203201 ~ 67203487 (-) True G1575977
TU1804691 other upstream 267108 68622248 ~ 68626119 (-) True LOC118941211
TU1805395 other upstream 393472 68748612 ~ 68787686 (-) True G1577745
TU1805790 other upstream 957746 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 957746 69312886 ~ 69315007 (-) False G1577996
TU1805797 other upstream 957746 69312886 ~ 69315007 (-) True G1577996

Expression Profile