RNA id: XM_036953605.1


Basic Information

Item Value
RNA id XM_036953605.1
length 2017
RNA type mRNA
GC content 0.50
exon number 10
gene id trit1
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 68938605 ~ 68996503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAAAGCGCGTGTCTGATCAGCTGGGAACGACGGTAAAAGCAACATGGCGGCGCCCGTGCGAGGCTTGCAGTGTGCTCTGAAAAAGAGTATTGTACCACCGTTAGTCGTGATTTTAGGAGCAACCGGTACTGGGAAGTCTAAACTGGCGATTGAAATTGGTAAACGACGTCAGGGAGAGATAATCAGTGCCGATTCCATGCAGgtGTATCGTGGGCTGGACATCATAACCAATAAGGTGACTGCTGAGGAGCGTGCCCAGTGCAGTCATCACATGATCAGCTTCGTGGATCCCTTGGTCAGCAGCTACACTGTGGTAGACTTCAGGAACAAGGCCCTGGCTCTCATAGAAGACGTGTACAGCAGAGAGAAGCTGCCTGTCATAGTAGGAGGAACTAACTACTACATAGAATCACTGCTGTGGAGAGTACTGATGGATGAAGGGGTAAGAGCCACACTCCTCACCCCTAACTCACCCCTACATCAGTCATTGCTGTGGAGAGTACTGATGGATGAAGGGcatgagaatgaaggagaggggaagaaaggcGGGTCTCTTGACGGGAAGGCGGAGCTCGAGAAACTGGGCGGGGCTGAGCTCCACAGGAGACTGACCGAGGTCGATCCTGAAATGGCCTCCATGCTACATCCTCACGACACACGCAAGATTGCCAGGAGCCTACAGGTGCATGCGGACACAGGCGTGCCTCACAGCCATTGgttggaggagcagagagggcaGGAGGGGGGAGATGTGCTGGGGGGGCCACTGAGGTACCCAGACCCCTGTATCTTCTGGTTACATGCTGACATGGAGGCCATAGATGAGCGCTTGGACCGGCGTGTGGATCAGATGCTGTTGACAGGCCTGATAGACGAGCTCAGAGATTTCCACCTGAGATTCAACCAGCAGAAGATTCAGGACCAGAGtcaggACTACCAGCATGGTATATTCCAGTCTATAGGTTTTAAGGAGTTCCATGAGTACCTGACATGTCCTGATGAGACGACACAGGAGGTCCGAGAGACACTCCGGaaccaagGACCAGGGGACAACGTCCCTGCGGTGTATGGTCTGGATGTGACTGACGTGTCACAGTGGGAGGAGACTGTCCTAAGCCCAGCCCTTCTCATACTGGATAGTCTTACTAAGGGGGAGCGACCTACCGTTGAGCCAATGAGAGTGGAGGGGGCGGGGAAGAGGAACAAGCGAAGCCGTCACACCTGTGAGCTGTGTGACAAGGTGATCATTGGAGATCTGGAGTGGACAGCCCATCTCAAGTCTAAAAAACACCACTATCATGTGAGGAAAAGGAGGAAGTGCGAGCCCGAACCTGAACCAGCCAGCCACCAGCCCCAGGGGACTACTCCACCTCCCACCTCTACTACAGATGGCCCTACCTTGGGTAACTCCACTACTCTAGCCCCTGGCTCAGCTGAGGCCTGTGGAGAACCAGAGTCCCCAGGTACCAGTTCTACTGAGAAAGAAGCCCCAGTTCTATAGGAGAGGAGGTATGCTTCACTATAAGGCCCTATGATCAGTATTGCTGATGGGACAGAAGTCAGTCTTTTTGGCCTCAGCTTGTCGGATTGACTCCTGTTAAATCAGAAAGATAAAACGGAACAATCAAAGACActtaaaaagtaaataaaaaataatggatTATCTGAGGACAACACAGAGACCGGGGAGAAGTCGGTCTCTTGACGACATCACCGCTATGACATCATCACTCCTGTCTATGACTTCATCGTTGTTGGACTCCAAGCTCATGGATTTGGTCGGTTTTGGTTCCTTGGATTCTGAAGTGAAGTTGAATTGTGACAGAACTCTCAAATGGAATGACAGTTGATGTTCTACAGCAGGGTTCAATAAGACCCCCAACCGTCTCTGTCCTCGTCAGGTAACCTGTCTAGTAAACACACTCTATGGCAACTGCTGTGTTTGTAACGAGATGTACATGTGTCTGCATTGTAATTAttataattaaagatacatttttttttttttaatatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1805505 lncRNA downstream 23810 68913637 ~ 68914795 (-) True G1577811
TU1805478 lncRNA downstream 48505 68886437 ~ 68890100 (-) False G1577793
TU1805480 lncRNA downstream 48505 68886437 ~ 68890100 (-) False G1577793
TU1805477 lncRNA downstream 48505 68886518 ~ 68890100 (-) False G1577793
TU1805470 lncRNA downstream 48788 68886518 ~ 68889817 (-) False G1577793
TU1805524 lncRNA upstream 790 68997293 ~ 68998379 (-) False myclb
TU1805522 lncRNA upstream 2483 68998986 ~ 68999640 (-) True myclb
TU1805551 lncRNA upstream 14272 69010775 ~ 69011122 (-) True G1577854
TU1805556 lncRNA upstream 27989 69024492 ~ 69024772 (-) True G1577859
TU1805557 lncRNA upstream 28503 69025006 ~ 69025312 (-) True G1577860
XM_036953602.1 mRNA downstream 239497 68626876 ~ 68699108 (-) True hpcal4
XR_005037544.1 mRNA downstream 313978 68622013 ~ 68624627 (-) False LOC118941211
XM_036953600.1 mRNA downstream 336331 68542299 ~ 68602274 (-) False nt5c1aa
XM_036953601.1 mRNA downstream 336331 68542299 ~ 68602274 (-) True nt5c1aa
XM_036953599.1 mRNA downstream 469278 68399984 ~ 68469327 (-) True LOC110496749
XM_021572916.2 mRNA upstream 766 68997269 ~ 69010704 (-) False myclb
XM_036953616.1 mRNA upstream 241540 69238043 ~ 69262803 (-) False spag1a
XM_036953615.1 mRNA upstream 241540 69238043 ~ 69262805 (-) False spag1a
XR_005037545.1 mRNA upstream 241540 69238043 ~ 69262805 (-) False spag1a
XM_036953617.1 mRNA upstream 241540 69238043 ~ 69262807 (-) True spag1a
TU1805395 other downstream 150919 68748612 ~ 68787686 (-) True G1577745
TU1804691 other downstream 312486 68622248 ~ 68626119 (-) True LOC118941211
TU1803844 other downstream 983393 67915188 ~ 67955212 (-) True G1576491
TU1803506 other downstream 1496629 67401448 ~ 67441976 (-) False G1576222
TU1805790 other upstream 316383 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 316383 69312886 ~ 69315007 (-) False G1577996
TU1805797 other upstream 316383 69312886 ~ 69315007 (-) True G1577996
TU1805967 other upstream 570681 69567184 ~ 69568164 (-) True G1578111
TU1805993 other upstream 607757 69604260 ~ 69606902 (-) True G1578132

Expression Profile