RNA id: XM_036953647.1


Basic Information

Item Value
RNA id XM_036953647.1
length 3599
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110496779
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 70776718 ~ 70789671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggTGTAGCCACAGATAGAGAACATCTCTGGTGCGGCTGTCTGACGCCGGTCGGCCATTTTGGGTTTGGTTTGTTCGACGACGAGCTGCTGGCTACCGACAACACCGATCAGGGACGAATACATAAAAGGAActgaacaacaaaaaaatacgtttaaaaaaaaaaactttactttAAAAAAGCAAAACATCGTTCAACATGGGTCCACCAGGAGACAACCTACGTCGTGTGTCCTCTGAAAGAACGGAGGATTTCAGTTGGTTTGTCAATTTATCTTGACATGGCATGTAAGGGTTAGTTAGTGGTTGTGACGACTGAAGGAAAAGCACGAAAAAAAAACCCCAGCGCAGATAAATAGTTAATAATTCAACTTCAACGGGGTGAaagaaattattattttatttttttcgaAAAACACGTTTGTTTGTctgtataaaaataataatatttttttttaaatctagtcGGTTCTCTCTTACGGGAATACTAACCAGCATGATGATATTGAAGCAAAATGTCATTTAAAATGCCGAGATACAACAGTTAGGTAGTCAAGCGGACAAGTCATTCCACATTAAACACCAAACAAGCCAGACAGAAACTCAGCGGAAATGTAAAACGAAACATGGGACTTGTCAGCTAACTTAACCCGCACGACAATAGGCCTCCAATTACATCCAACTAATAAAAATGATGTAGCTAGTTAGTTGACCCACTAACTAGTTAGTGTTGAAAGTGTATGCTGCTTAGTCTTAACTAGTTCACGTTTAACTTTGTCAACTAAAACATAGTCACGCTATGAGTATCGACAACGGAAGTAAACAAGGCCGCGGACCAGTTCAATGGCATTAAAAAAACACCCCGGGAGATGTTAAAATACTCTGTAAACTTCAATGTTTTAACTTGGTGCCATCGGCTTCTGGCATCCACATTGACTTGTCATGATGCTTTTCTATATATGTCCCTCAGTTATTCAGGAACACGTTCATAACGCGGTCTCTGCCGAGaaataaacacaaacaaaacGGCGTCAATCATGGACGAAGCTTTGAGTTTGAGAAGACACGAATAAAATTGTCTTGCTTTTTGTTTTGTGTAGTCATCTCCTATTTCACTAGCGAGAAGTAGTGTCGGTATGGGTTTGGGAAATGGCTATCCTTTCTGTTAGTAGTTGTTGTCAGTAACCTAAAGGAAAAGGTGTACTTCTCATTTTTAATTTGCTCCATTTGTTTTCACTAGGCAAATGTGTTAGAATTAAAGTTCATTTGGTCTGTATTCAAATGTCATACTTTTAATCACAGCATGGCTTCTTGAGTAATTACTAAAACAAATGTAGCCAAATATTGATTCAAGAACCCCCGCTCCCCCTCCTGAGCATAAACTATTTTAAATAAACAAAATGACATAGCTTGCTATTTCATTCGTTTCCTCCTTAAGTTGGTAGTTATTTCAAAAGAGCTAGTGTAGAATAATTTAGATTTCTCGTTCTGTAAAAGGTAGCTAACGAGCTACATATAGACAACTCGAAAGTATAGTCAAAAATATTCTGTAATTAGAGAAGACACCTAGCATCAAAATCTAATCATGGGGGACCCAACCTGGAGAAGAAACCAAACTAGAGATCGACTCCGTGCTCAGATTCGAAAGAAAAGGGAATCTTTGGCAGACCAGTTTGACTTCAAGATCTACATAGCCTTTGTGTTCAAGGACAAGAAGAAGAAGTCTGCACTGTTCGAGGTAGCTGAAGTGGTACCAGTGATGACCAACAACTATGAAGACAATATCCTGAAAGGTGTGCAGGCTTCCAGCTACTCCCTCCAGAGTTCCATGGAACTTCTGCAGAAAGATGTCGTGCAGTTGCACGCCCCACGCTACCAATCAATGCGCAGGgatGTCATAGGATGCACCCAGGAGATGGACTTCATCCTGTGGCCGCGCAACGACATAGAGAAAATAGTCTGTCTCTTGTTCTCCAGATGGAAGGGGGCCGAGGAAGAACCCTTCAGGCCTGTTCAGGCCAAGTTTGAGTTTCATCATGGAGACTACGAGAAGCAGTTGTTGCATGCTGTCGGCCGGAGGGACAAGGCTGGAATGGTTATGAACAACCCAACTCAGTCGGTCTTCCTCTTTATGGACCGACAGCTCTTACAGACTCCTAAAACCAAGGCCACAGTTTTTAAGTTGTGCAGCCTTTGCCTGTACCTGCCCCAGGACCAGCTAACGTGCTGGGGCGTTGGAGACATCGAAGACCATCTCCTCCCGTACATGCCCGACTAGGGCCAGCCGGCCTCCATGGCTTCCACCCACAACACAAGGAAGACTTAACCCCTAAGCCACTGAAGCAAGTTGATCTCATCCACCACACATCCTTCCTTCCATTGAATAGAACTGCTGCTTGGGTCTcttgtttgtcagtttccatcGTCCTGAAgctaattttaaaaaaataaataaaaaatctgtaTTTGTTTTTCCTTACCTACCAAGCTTCCTCCTCCTAGCTCTGCTCCTACCAGTTTTGGATTGGTTCTACCTTTTAtccaccctccctccactaccCATCTTGTTTTTCTCTGTTTATTTTGAACCTGCACGAACATTGATTTTGAGTGGTTGGTTATTTCCCCCCCCCCATGGAGCTGCACTGTCAAGGACACAGAGCAGTCACTGAAGGAACTCTTCACGTTGCTACCAAGCAGGAACAAAAGCCACAGGTTTTTCTTTATGATGTTCACAGGGGGTCCTCTGTCTCTGCTGGACACATTGTAACCCATGTCATAACAGATTGGAAAAGCTTCTATCATTTCAAAAGCTTGGGTTAGAGGAAAACATACCTGGGGAGGGGGTGTTCTAGAAGGACTAGCTACCATCTATGACGGGTCAGCCTAGGTGGCGTTAAAACGTCCCCTGTAAAGCCAAGATAAAAGATGAAGGAGTGTTTGTCAAATCATTTGGTATTTACATCTTTATTTTTCCTTTTTTAAGCCACCCTTGTTTAATGTTGGCTGGTTATTTTCTTTCTGGGTTCATTTGCTTTTCCTGTGAAATATGCCAGGAACACCATTGGTCTGATCTGGAGTATAGTTGGAAACTGATGGGAGGAAGTTGTCAGACAGACGGTATCGCATGGTGTGGACCGACACACAGGGTTgaaatgttttattatgttgAAGGTTGTTACCACGCAAAGCCATTCAAGCTACTGAAATCTGATGTTTGTTTCTGGGTGGGGGTTGGCATGGGTGTTGTTTATAATTGCAGAATGAATGTACCTAACAACAGAACAGGTTGTTGAGTTGAAATTAATGGGACCGTTACATGTTTATGTTCCTTTAATTCGATAGACAAGTATCCTAAAGGGGACTAATTGTTGCAGTGCTTATAAAATGTAAAATGGGGgtggtttttgttttgttgttgcgtGCTTTGCTGGGGGGAAATAAGGCACAAATCAGTCAGTACATTTAATTGAGGGATTTCTTTGTTTCAATATGTTTGATTTAAAGGTTATTTGAGTCTATTCTTCCTTTCCTTTTTTTAAAAAATGCATCTAGAAATCAACACGGCTGAACAAATCCCAATACAATGTAACATTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1806977 lncRNA downstream 1773 70774535 ~ 70774945 (-) True G1578931
TU1807007 lncRNA downstream 7959 70768405 ~ 70768759 (-) True G1578953
TU1807006 lncRNA downstream 8430 70768017 ~ 70768288 (-) True G1578952
TU1807005 lncRNA downstream 10156 70764825 ~ 70766562 (-) False G1578951
TU1807002 lncRNA downstream 10380 70764787 ~ 70766338 (-) False G1578951
TU1807037 lncRNA upstream 25800 70815471 ~ 70815709 (-) True G1578972
TU1807038 lncRNA upstream 26287 70815958 ~ 70816197 (-) True G1578973
TU1807088 lncRNA upstream 66875 70856546 ~ 70857751 (-) False G1579010
TU1807087 lncRNA upstream 67200 70856871 ~ 70857914 (-) True G1579010
TU1807110 lncRNA upstream 134862 70924533 ~ 70926901 (-) True G1579028
XR_005037548.1 mRNA downstream 41917 70734382 ~ 70734801 (-) False LOC118941215
XM_036951083.1 mRNA downstream 58314 70645943 ~ 70718404 (-) True LOC118941013
XM_036953643.1 mRNA downstream 168667 70570629 ~ 70608051 (-) False LOC118941214
XM_036953640.1 mRNA downstream 285817 70458975 ~ 70490901 (-) False lrrc69
XM_036953639.1 mRNA downstream 285818 70458975 ~ 70490900 (-) False lrrc69
XM_036953653.1 mRNA upstream 531858 71321529 ~ 71779541 (-) False LOC110518582
XM_036953652.1 mRNA upstream 1014650 71804321 ~ 71821112 (-) True LOC118941218
XM_036951085.1 mRNA upstream 1057762 71847433 ~ 71874670 (-) True LOC118941015
XM_036951086.1 mRNA upstream 1153557 71943228 ~ 71944243 (-) True LOC118941016
XM_036953651.1 mRNA upstream 1226250 72015921 ~ 72236753 (-) True csmd1a
TU1806999 other downstream 15932 70759159 ~ 70760786 (-) True G1578948
TU1807000 other downstream 20043 70754159 ~ 70756675 (-) True G1578949
TU1806732 other downstream 287215 70488847 ~ 70489503 (-) False lrrc69
TU1806734 other downstream 350141 70426220 ~ 70426577 (-) True G1578765
TU1806528 other downstream 389243 70384835 ~ 70387475 (-) True G1578607
TU1807017 other upstream 8124 70797795 ~ 70798639 (-) True G1578963
TU1807034 other upstream 21354 70811025 ~ 70812510 (-) True G1578970
TU1807240 other upstream 364166 71153837 ~ 71154277 (-) True G1579147
TU1807321 other upstream 453020 71242691 ~ 71243093 (-) True G1579220
TU1807835 other upstream 619302 71408973 ~ 71427784 (-) True LOC110518582

Expression Profile