RNA id: XM_021572794.2


Basic Information

Item Value
RNA id XM_021572794.2
length 1792
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110496760
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73388761 ~ 73393698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACTAAAAGACAGACGCCTCAATATAAAGTTGTAAATTCAGTCGTATTTTTTAAAATCAGAGAATCACCGAAACAACGAGTTATGAGAGCGAATCAAATTAATGATATttaggtttaaatatatatatttttcaacctTGGAAAGAGAATGAGTGGAGATAGCTTGCGCTGAGAATCCGTGTGTAAAGGTAGACGCACTTTTAGGACGCACAACATATAAACCGTTTCAACTGACTCCACAAGAGATCAGCCATGGATTTTTGCCTCAACACGGACTAAAGTTCGTTCTTGAAGAGGTCCGACCCGCTCCGACCCTGTCCCATACCAGCCCGAATAGTGCAGCAGGTGGAGGATGGCCGAGAGAGTGACTTGGTGGAGAGCGTTTATGGGGAACAATAAGAGAACGAGTAGTGGTACCAAGGACATCGCCACTCAGCTCCCCGACACAATGAAGGACCCTCTGACGCCCAGCACACAGGGAGTCCTAGCAACACCACACTCAGCAGCCCCCAAACTCCCAACCGACCAACAGCCTCCAGCATCACAACAGCTACCAGCATCACAGCAGTCACCAGCGTCACAGCAGCCACCAGCATCACAGCAGTCACAGGCACCAGTCAGTACAGGCAACAGCCTCTTCAGCGACGAGACCTTCGATGACTCCCAGTTTGAGTCGGTCTTCAACGAACAGACGTGTCGTAGGAACCTGAGGGTGTCTCGGTCAGGCCGGTTTAAGGAGAAGAAGAGGGCACGCTCCAGTCTTCCTACTGGGAAAGAGGACGTACGATGACAAGGATGGCGATGAGGATGAGGGAGATAGTGGCCAAAGACTGCTCTTACTTCTGAACTTTATTTCAACATGGCCGTCCGTTCTGGGGAAAGACGAAGGTAGATGAAGATGAATTGTAAGTTGAAGATAAGTTGAGGGTTAATTGAAGATAAGTTGAGGGTAAGTTGAAGATAAATTGAGGGTAAGTTGAAAATAAGTTGAGGGTAAATTGAAGATAAGTTGAGGGTAAATTGAAGATAAGTTTAGGGTAAGTCGAAGATAAATTGAGGGTAAATTGAAGATAAGTTGAGGGTTAATTGAAGATAAGTTGAGGGTTAATTGAAGGAAAGTTGAGGGTAAGTTGAAGATAATTTGAGGGTAAGTTGAAGATAAGTTGAGGGTAAATTGAAGATAAGTTGAGGGTAAATTGAAGATAAGTTGAGGGTTAATTGAAGATAAGTTGAGGGTAAATTGAAGATAAATTGAGGGTAAATTGCAGATAAGTTGAGGGTAAATTGAAGATAAGTTGAGGGTTAATTGAAGATAAATTGAGGGTTAATTGAAGATAAGTTGAGGGTAAGTTGAGGGTAAGTCGAAGATAAGTTGAGGGTAAATTGAAGATAAGTTGAGGGTAAGTCGAAGATAAGTTGAGGGTAAGTTGAAGATAAATTGAGGGTAAGTTGAAGATAGTGATTTGAGACTTTGACTTTACCATTTGGAACCCTTTTGTCAGTACTAGAGAGTCTGAAGTTATACTCTCCTGTACCTCCTGTCTTGTTACATTATAATGGACTGCTGATTGGCAGTAGTGAACATTTCTCAGTGACAGCTAGGTAGGCACTTAACAGTCCTTCCCTGAGGAAATCACAGGTCTGACAAGGTTTGATTGATTTAAAGCAAAAGGAAGACAAGTGTGTCTTTACTAATCCAATCCCATAAAGATCAGTGGTTAGGCTACTTCAAGAAAGGAAGGaagtgagggaggaaggaaggaaggaaggaaggaaggaaggaagggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1809261 lncRNA downstream 4708 73383851 ~ 73384053 (-) True G1580752
TU1809257 lncRNA downstream 7093 73381458 ~ 73381668 (-) True G1580748
TU1809256 lncRNA downstream 7980 73380499 ~ 73380781 (-) True G1580747
TU1809254 lncRNA downstream 9515 73378529 ~ 73379246 (-) True G1580745
TU1809247 lncRNA downstream 20253 73367429 ~ 73368508 (-) True G1580738
TU1809303 lncRNA upstream 2771 73396469 ~ 73396718 (-) True G1580785
TU1809305 lncRNA upstream 6550 73400248 ~ 73400493 (-) True G1580787
TU1809313 lncRNA upstream 9497 73403195 ~ 73418973 (-) False G1580788
TU1809315 lncRNA upstream 9497 73403195 ~ 73418973 (-) False G1580788
TU1809317 lncRNA upstream 9497 73403195 ~ 73419028 (-) True G1580788
XM_036953659.1 mRNA downstream 25030 73304371 ~ 73363731 (-) True LOC110517586
XM_036953656.1 mRNA downstream 257322 73018796 ~ 73131439 (-) False LOC110496752
XR_005037550.1 mRNA downstream 306865 73079404 ~ 73081896 (-) True LOC118941220
XM_036953651.1 mRNA downstream 1152008 72015921 ~ 72236753 (-) True csmd1a
XM_036951086.1 mRNA downstream 1444518 71943228 ~ 71944243 (-) True LOC118941016
XM_021572791.2 mRNA upstream 40017 73433715 ~ 73445162 (-) True LOC110496758
XM_036953664.1 mRNA upstream 361666 73755364 ~ 73763523 (-) False LOC110489356
XM_036953666.1 mRNA upstream 428310 73822008 ~ 74115567 (-) False LOC110496905
XM_021559729.2 mRNA upstream 915784 74309482 ~ 74331094 (-) True LOC110487813
XM_036953667.1 mRNA upstream 1024437 74418135 ~ 74437944 (-) True mc5ra
TU1809096 other downstream 340075 73047833 ~ 73048686 (-) True G1580625
TU1809076 other downstream 371977 73006005 ~ 73016784 (-) False LOC110496752
TU1808230 other downstream 1173972 72214174 ~ 72214789 (-) True G1579954
TU1807949 other downstream 1750629 71636487 ~ 71638132 (-) True G1579715
TU1807898 other downstream 1870292 71517869 ~ 71518469 (-) True G1579672
TU1809412 other upstream 131584 73525282 ~ 73525595 (-) True G1580844
TU1809846 other upstream 430333 73824031 ~ 73827937 (-) False LOC110496905
TU1809850 other upstream 434394 73828092 ~ 73833204 (-) True LOC110496905
TU1810036 other upstream 763607 74157305 ~ 74157747 (-) True G1581344
TU1810163 other upstream 913080 74306778 ~ 74307678 (-) True G1581465

Expression Profile