RNA id: XM_036953666.1


Basic Information

Item Value
RNA id XM_036953666.1
length 5643
RNA type mRNA
GC content 0.56
exon number 14
gene id LOC110496905
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73822008 ~ 74115567 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgagagcgctCAGACAGCGAGCTGCGGAGAAAAATAACGGACCAGCCACCGCGCTGGATCTCTCCTCCTTACCGACGCGGGGGGGGGAACCAAACCGAGGAATACTGGTGTTTTATTCAAACGAAGAAACGGGTCTAAAACCTCGCTGAACAGACAAGATTCCTGGCAGAGTGTGTGAGCGCTACAGGGGATCAGTCGGTGTGTTTGTGAGAAGTACTTTCCTAACGGCAGACATGGAGACCCATTTCCTGATGAGAGTGTTGTGAGTCCGGCGCAGCCCTGTCGCGCCCACAGCGTCCCCTCTCGGCCCGGGTGGCCCACCACGGCCCCCCGGCCTCCTCAATGAAGGGGTATCATGTCAGCCGCAGCCTGTCCCAGCACTCTTCTGGCGGGGGGCACACACAATGTGACCCGGGCCCGGGCCCTGGCTCCGTCCGAGAGTACCACCGCCACCCCTCTGAACACTACGACCGGGCGGGGAACCCCTTCTACGCCCCCGGTGGTCCCCCAGAACCCCTAGCTCTGGAGCATCGCTCCCACACCCACTCTGGAGGGGGGACGTTCCCCCGCTCCCACCCCAACCAGCATCCCCCGACCCAGCAGTTGTACGACTCATGTGAGGATTGTCTGTCCACGGTGGGGGGTCACGGGGGTAAGATGCATCGCATGCCTCCTAACCTCCAGGATCAGTTTGAAAAGCAGCTTCCCTTCCACCCTGACGGGTTCCACACCCTGCAGTACCAGAGGAGCGCCAGCGGGGCGGAACAGCGCGGCGAGAGCCCCTCCCGTATCCGCCACCTGGTTCACTCAGTCCAGAAACTCTTCGCCAAGTCCCACTCCCTCGAGGCGCCGTCAAAGAGGGAATACAACGGCACACGAGGAGGGGAATAccgagaaagaggaggaggggggcccaggagcggaggagaggaagGTGGCGGGCATAATCATTCGGGCCACCAATCCCGCTCGGCGAGGCGCAGCAAATCCCGCGAGCGCTCCAAAAGCGGGGATGGGCGCCACGAATCCTCCAGCAGGCGGCACAGGAGCCGAACCGCGGGGTGGTGGAGCTCCGACGACAACCTCGATAGTGACAGCAGCTTCTTGGTAACCGGGGGCAACACCGGGCCAGGTGGTCGAGGTGGCGGGCGAGGCGGATACCCCACGGGCCACGAGAGTCTGGACGCTGCCATCCAGGAGCTGACCATGAAGAAACTGCCCAGACAGGGGAGTGTACCACCAGGGCCCGGGCCGGGGGAGTGCATGGCCTGTACCACTCTGGCCCTGGCAGGgggggagggtggtggagggggagtgGCAGGGTACCATGGAGGGCCAGGACAACACTCTCTGAAGAGGAGCACGTGGTCGGCCATGACGGTCAGCCAGGCTAGAGAGGTGTACCCATCGTCTGtccggggaggaggaggaggaggaggaggaggaggctatGACAAGGCCTTGGTACCTCTGGAGAACAAACTGAAGGAGAGGACCTTTCACTACTTacaggtccCGTCAGACGGGGTGGAGTGGGGTGGTCCTGACGGAGAGGGGGAGATCCCCTGCAGGCGCATGCGGAGCGGCAGCTACGTTAAGGCCATGGGAGACGACGACAGTCAGGACTCTGATGCCAGTCCTAAAGCCTCTCCTAAAACCACCATCATCGCCCAGAGAGAGGCCTTCAGACGCTCTGTCAGCATGGACCACAGGTCATCTGCCACCAAgtactcATGTAAGCAGTGTGTAGATTCTACTCTACCCTATGCTAACAGCCGAACCAAGCCCAAAAACCACGCCCGCTCTCGGAGCTACACTCGTTCTTTAACCAGCTCACAGctGGGTGACTCTCTGAATCGTCAGTTTGAAGCGGTGTGTGAGACCATGTTTGGAGAGATTGAGAGTCAGGCGGTGGAAGCCTTGGATCTACCTGGATGCTTCCGGACCCGTTCCCATAGTTACGTCCGCGCCATCCAGGCCGGCTGTTCCCAAGACGACGACTGCCTGTCCGTCTTCTCCATATCGGGACCCCAGGGTAGCATCAAGGGAGGAGccatttttCCATACCGTAAGGGTggccctccccccctccctcctcgtATGTCCAAGCCTATCATCTCTGTGAGGGCTCAGAGTAGTACAGAGTCTACCCAGGATACCTACTTCCAGAACACAGGCCAGCCTGCCCTGGGACGACCCAGGCAACACCATAGCCACTCTGTCGACCTGGGAATCACTGATGTTGTGGTGTCTGGTCAGACCTCCAGGGGATCCAGGGAAGGAGGTTACTACACAGGACCAGGACAAGGCCGCTCCCGCCAGCACTCCAACTCAGCCGAGAGTCTGGACGGGGTCCTCCGGGGCGGGCGTGAGCTGATGCCctatggaggaggaggacagggaccCATCAGAGTCAAACACAGTGGCTCCGCGGATAGTCTCCTGGAGGGGcccaggggaagggagaggggagagagggatatgagGCGGGCAGGGGGGAGTCTGTGGAAGTCTGCCTCCCTCCCACAGAACAGTATGGTGCTGAGtaagatgggaggaggaggaggaggaggaggaagaggaggaggacaggaggagaacaagacagagggaagaggaaggaATTGGAGGCCTTCTATCGCTGTACAGGTGGACAGCCCGGGGACCCTGACAGACTCGGACGCGGAGAgcaaggctctgagagaggttcACTCTATAGGAGTGCAGGTGGAGGAAGACAAGAGgcgTGCTCGGTTCAAGCGCTCCAACAGCGTGACGGCCGGCGTCCAGGCAGACCTGGATCCAGAGGGGGGTTACCCAGGCCTCACCATCGCTGTACCTACCCAGGATAAGAACCTACAGTTCCCAGGCCACACCATCGCTGTTCCTACCCAGGATAAGAGCCCCCAGTTCGGCTGCTCCTTCCAGAGACACTCCTCAGAGCCAGGGTCAACCGACCAGTACGCAGAGTACCACCGCACGGTGCACACCCAGGGCCAGTGGACCTACAGAGAGGACTATGTTCAGGATGGTTACGCTACAGACAACCACCAGATCCCCCCGCTGCCCCCGCGGGCCCACTCCCCCCTGCCCCTCGCTGCGGACCGTGGAGGCTGGACAGGTACACCCCAGCCCTCACTGGAGGGGGGCCCCCGGAGTCTGCCCGACTCTGGTCGCGCCTCGCCCTGTCTGAGAGACGGAGAGTTTTTCCTACGCCTCCTTcagatggaggtggagaggatggagggatggtgtcagaacatggagagagaggcggaggagAACGAGCTGCCGGAGGAGGTTCTGGAGCTGATCCGTAATGCGGTGGGCAGTGCCCAGATGCTCATGTCTCAGAAGGTCCAGCAGTTCTTCCGTCTGTGCCAGCAAAGcgtggACCCCTCAGCATACCCCCAGCCCACCTCTCAGGACCTGTCCGGGCTCTGGGACCTGCTCCAGCTCAACATGGAAGACGTCAGGGTCAAGTTCCAGCACCTCCAGAGGCTCAAGGACTCCGGCTGGAGGCTTCCCCCAGACAAGAAGGATGACAAGAAGCTTCCTCCCCCACTACCAAAGAAGCCAGCTGGGGGAGTGAGTGGCAGTCTCCGTGCTGACAGCGTCAACGACCTCTCAGTGGAACGAGGGGTAGGAGGAGGCGGAGGGGTGTTGGTGATGGCCCGTAGCGGGGGTGTGGGACGGGCCGTGCCTATCCGGGAGAAGTCCTTAGACctgggggacagacagaggacTGAGGCACGCAGGAGACTGCTCCAGACCAAGAGGTCCTCTTCCTTCAGACAGAACTCAGCCACGGAGAGCGCCGACAGCATCGAGATCTACATCCCAGAGGCTCAGACCCGGCTCTGAACATGGTGATACAGCCCTTTATCCCAGTGAACAGAACCGACCCGACGCCTGGGACAGCCTAAATATAGAGATATAGCTAGCTATCCCAACCTAGAACGACCACAACCATTGAGATCTACATCCCGGAGGCTCAGACCCAGTTCTGAACACTGGAACCAACTAAACGTGGAGATACAACCTATTTTCTGAGGATCCTGGATCAACCAAAACTCTCCCAAGTTCCATACACTGATCCCCCCTCTCCCAATGACGATATGGGCCATACTGACTTTCTCAAGCCTTCACTGTTGGGGGATGCTGGGTCCCATCGTCATGGCATTCCATGGACGAGGCAAGACAGAAGGGGAGAGCCATTTGTGCCCTGGAACTTTGAATCCCcaataaacaaacacaaacaatcTGTGGCGAGAATGATGACTACGGGGATCACAgttgactccacacacacatttatttccCTCATCTTAgtcggggggagagagagatagagctgtaaAATACAGTGACAGTCACTGAAAGGTGTAGTCATGCAATAGTAGCATGTCTGTGCATGCCTGTCCACCTATAGCGTAGCCTAGCCACGCCTGGAATAGCCTAGCCTATCTTAGCCTCTTAGCTCATCTTAGCCTCTTAGCCTATCTTAGCCTCTTAGCTCATCTTAGCCTCTTAGCCTATTTTAGCCCATTTTAGCCTCTTAGCTCATCTTAGCCTCTTAGCCTATCTTAGCCTCTTAGCTCATCTTAGCCTCTTAGCCTATCTTAGCCTAGCTTCCATCTTCACAGGAAATAAGGGCTTCACAAATCTCAACCACTCTTGTGGGCATGGAGCAGATTCTCCCTCTAAATGGCCACTCAACATCACCCAAGGCTCTAAAGGTAATCTCAATATCAACTAGCTACCGTTCGACGCCATTTGGCTAGTTGGCTGCATCCTCTGAAGACTGTGTTAATACACACTCACTCAACATTCAACTGTGGATTTCATTTTAACCTACATGCCTCCTACACATGTCCCGGTCAACACTCATTCACCTAAGGTTTTATTCTCTCGCGACTCCTTCCTATTGGCCCGAGCATCCATCAATCTACCAGCTGTCTGGGCAGCAGTGTACTGTTTGAAGGAGagtgtgtttttctttttttgtacaTCGTTTTGAACGATGCTGTTCACCAGCTATCTAGTGTGGCACGGTATACTTGACAGCCAGAGAacatcacaaacaaacaaaaaaccttgaagctgttttcatttttttgttaTAGATATTCCTTCTGAAGTGTAAAAGGTTTGGCAGTGGGTGGGTGGtttgattctttttttttttttgagttttAGAGTTTTTCAGAATATTGAAATTTCACAACAGGGGATCCTTTTTCACTGTGAGACAATGGCACCCCCTGGTGGCCAAAATGAGAATCACAGAATAACTGTCAGAGGAGGAGGGTGTGTGGGACTGGGGAATATCGGCCTCATAAAAACAGGAGACTTACGTAGCAAAAAAAGTCTTATGTATTTTTTagatatatttattacatttccaACAAAAATGATTTTTTTCAAGATTGGATCGACAAGCAAAATGGCAAAATGAATTGAAGAGCTGCGAGAATTGAAGGCGATTTCTCTGCCTGTCAGCTTCCTCCTCCCTCTATGTAACTTCAGCACAAGACCCTTCCAACGGAGAGAGGGATTAACTCTTTGCTctcctttcaccccccccccccccctccctctctctctctctctcttcctgtctctcaattcaattcaattcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1809837 lncRNA downstream 8702 73810941 ~ 73813306 (-) True G1581185
TU1809833 lncRNA downstream 10702 73810121 ~ 73811306 (-) False G1581185
TU1809843 lncRNA downstream 31894 73787827 ~ 73790114 (-) False G1581186
TU1809839 lncRNA downstream 32663 73788554 ~ 73789345 (-) True G1581186
TU1809826 lncRNA downstream 58486 73763279 ~ 73763522 (-) True LOC110489356
TU1810019 lncRNA upstream 11514 74127081 ~ 74127956 (-) False G1581332
TU1810021 lncRNA upstream 11514 74127081 ~ 74127579 (-) True G1581332
TU1810038 lncRNA upstream 44198 74159765 ~ 74160167 (-) True G1581346
TU1810053 lncRNA upstream 70801 74186368 ~ 74186660 (-) True G1581360
TU1810056 lncRNA upstream 75441 74191008 ~ 74191226 (-) True G1581363
XM_036953664.1 mRNA downstream 58485 73755364 ~ 73763523 (-) False LOC110489356
XM_021572791.2 mRNA downstream 376846 73433715 ~ 73445162 (-) True LOC110496758
XM_021572793.2 mRNA downstream 428310 73388761 ~ 73393698 (-) False LOC110496760
XM_021572794.2 mRNA downstream 428310 73388761 ~ 73393698 (-) True LOC110496760
XM_036953659.1 mRNA downstream 458277 73304371 ~ 73363731 (-) True LOC110517586
XM_021559729.2 mRNA upstream 193915 74309482 ~ 74331094 (-) True LOC110487813
XM_036953667.1 mRNA upstream 302568 74418135 ~ 74437944 (-) True mc5ra
XM_036953668.1 mRNA upstream 380815 74496382 ~ 74540849 (-) False ldlrad4a
XM_036953670.1 mRNA upstream 380815 74496382 ~ 74540849 (-) True ldlrad4a
TU1809412 other downstream 296413 73525282 ~ 73525595 (-) True G1580844
TU1809096 other downstream 773322 73047833 ~ 73048686 (-) True G1580625
TU1809076 other downstream 805224 73006005 ~ 73016784 (-) False LOC110496752
TU1808230 other downstream 1607219 72214174 ~ 72214789 (-) True G1579954
TU1807949 other downstream 2183876 71636487 ~ 71638132 (-) True G1579715
TU1810036 other upstream 41738 74157305 ~ 74157747 (-) True G1581344
TU1810163 other upstream 191211 74306778 ~ 74307678 (-) True G1581465
TU1810323 other upstream 331029 74446596 ~ 74446989 (-) True G1581622
TU1810332 other upstream 342115 74457682 ~ 74458316 (-) True G1581629
TU1810456 other upstream 406591 74522158 ~ 74532080 (-) True G1581737

Expression Profile