RNA id: TU1725658


Basic Information

Item Value
RNA id TU1725658
length 326
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1508794
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 113258 ~ 114180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacaaggttagaatcagggggtgctttacgtcaacagagacaaggttagaatcagggggtgctttacgtctacagagacaaggttagaatcagggggtgctttacgtctacagagacaaggttagaatcagggggtgctttacgtctacagagacaaggttagaatcagggggtgctttacgtctacagagacaaggttagaatcaggcggtgctttacatctacagagacaaggttagaatcagggggtgctttacatctacagagacaaggttagaatcaggcggtgctttacgtctacagagacaaggttagaatcaggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1725655 lncRNA upstream 3650 108931 ~ 109608 (+) True G1508791
TU1725634 lncRNA upstream 4573 106236 ~ 108685 (+) False G1508779
TU1725633 lncRNA upstream 5103 106236 ~ 108155 (+) False G1508779
TU1725638 lncRNA upstream 5103 106236 ~ 108155 (+) False G1508779
TU1725639 lncRNA upstream 5103 106236 ~ 108155 (+) True G1508779
TU1725660 lncRNA downstream 3799 117979 ~ 123374 (+) True G1508795
TU1725667 lncRNA downstream 12551 126731 ~ 127162 (+) True G1508802
TU1725669 lncRNA downstream 16010 130190 ~ 132541 (+) True G1508804
TU1725676 lncRNA downstream 35661 149841 ~ 150343 (+) True G1508810
TU1725684 lncRNA downstream 50400 164580 ~ 165511 (+) True G1508816
XM_036951427.1 mRNA upstream 23757 76907 ~ 89501 (+) False LOC110528717
XR_005037338.1 mRNA downstream 308100 422280 ~ 426128 (+) False LOC118941071
XR_005037337.1 mRNA downstream 308100 422280 ~ 426130 (+) False LOC118941071
XR_005037336.1 mRNA downstream 308100 422280 ~ 426131 (+) False LOC118941071
XR_005037339.1 mRNA downstream 308100 422280 ~ 426131 (+) False LOC118941071
XR_005037340.1 mRNA downstream 308100 422280 ~ 426131 (+) True LOC118941071
TU1725647 other upstream 33312 76903 ~ 79946 (+) False LOC110528717
TU1725907 other downstream 220252 334432 ~ 335177 (+) True G1508964
TU1725947 other downstream 250747 364927 ~ 367431 (+) False G1508979
TU1726036 other downstream 328623 442803 ~ 444877 (+) False G1509015
TU1726040 other downstream 328623 442803 ~ 444877 (+) False G1509015
TU1726042 other downstream 328623 442803 ~ 444877 (+) False G1509015

Expression Profile