RNA id: TU1725667


Basic Information

Item Value
RNA id TU1725667
length 410
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1508802
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 126731 ~ 127162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTAATTGTTGAGTCACAATGATGGCAATACTATATAACAACATCCCCCTCAGCAGGAGCCTACATATTATGTTACAAACACCCAGCCTACAAGGCTTTTATTAATCACCAGTTAGGGTGGACAATGTCCCTTATTAAATTatacaaaaatacatttgaacaTTGGAAGGAGGGAAAAAAAATGCATTcataatatgtatatgtatgctACTACAGATCCCAGAGTGCATTGCTGGGTTGGGAGGAAGTGGTGTCGACCCCCCAAAAAACGTCCTGAGCACCTGTTGCACAGATCCACCCCATGAGAGCTCTCAATGTCAGGATAATAAGTGGGGATCTCTCCAGTAACAGGGATGAATGAGGATGCTGattggtgtatgtatgtgtgtgtgtgcttgcgtgagaaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1725660 lncRNA upstream 3357 117979 ~ 123374 (+) True G1508795
TU1725658 lncRNA upstream 12551 113258 ~ 114180 (+) True G1508794
TU1725655 lncRNA upstream 17123 108931 ~ 109608 (+) True G1508791
TU1725634 lncRNA upstream 18046 106236 ~ 108685 (+) False G1508779
TU1725669 lncRNA downstream 3028 130190 ~ 132541 (+) True G1508804
TU1725676 lncRNA downstream 22679 149841 ~ 150343 (+) True G1508810
TU1725684 lncRNA downstream 37418 164580 ~ 165511 (+) True G1508816
TU1725810 lncRNA downstream 76547 203709 ~ 216458 (+) True G1508883
TU1725827 lncRNA downstream 101584 228746 ~ 229394 (+) True G1508897
XM_036951427.1 mRNA upstream 37230 76907 ~ 89501 (+) False LOC110528717
XR_005037338.1 mRNA downstream 295118 422280 ~ 426128 (+) False LOC118941071
XR_005037337.1 mRNA downstream 295118 422280 ~ 426130 (+) False LOC118941071
XR_005037336.1 mRNA downstream 295118 422280 ~ 426131 (+) False LOC118941071
XR_005037339.1 mRNA downstream 295118 422280 ~ 426131 (+) False LOC118941071
XR_005037340.1 mRNA downstream 295118 422280 ~ 426131 (+) True LOC118941071
TU1725647 other upstream 46785 76903 ~ 79946 (+) False LOC110528717
TU1725907 other downstream 207270 334432 ~ 335177 (+) True G1508964
TU1725947 other downstream 237765 364927 ~ 367431 (+) False G1508979
TU1726036 other downstream 315641 442803 ~ 444877 (+) False G1509015
TU1726040 other downstream 315641 442803 ~ 444877 (+) False G1509015
TU1726042 other downstream 315641 442803 ~ 444877 (+) False G1509015

Expression Profile