RNA id: TU1725889


Basic Information

Item Value
RNA id TU1725889
length 240
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1508949
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 294083 ~ 294322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaacggtaaactcactctttacctcaactaaacggtaaactcactctttacctcgactaaacggtaaactcactctttacctcgactaaacggtaaactcactctttacctcgactaaacggtaaactcactctttacctcgactaaacggtaaactcactctttacctcaactaaacggtaaactcactctttacctcaactaaacggtaaactcactctttacctcaactaaacggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1725878 lncRNA upstream 8124 284602 ~ 285959 (+) False G1508941
TU1725879 lncRNA upstream 8124 284602 ~ 285959 (+) True G1508941
TU1725858 lncRNA upstream 21972 271232 ~ 272111 (+) True G1508925
TU1725853 lncRNA upstream 46878 246669 ~ 247205 (+) True G1508920
TU1725827 lncRNA upstream 64689 228746 ~ 229394 (+) True G1508897
TU1725912 lncRNA downstream 49723 344045 ~ 345453 (+) True G1508967
TU1725920 lncRNA downstream 51894 346216 ~ 348477 (+) False G1508969
TU1725922 lncRNA downstream 51894 346216 ~ 348391 (+) False G1508969
TU1725924 lncRNA downstream 51894 346216 ~ 348391 (+) False G1508969
TU1725919 lncRNA downstream 52420 346742 ~ 348477 (+) False G1508969
XM_036951427.1 mRNA upstream 204582 76907 ~ 89501 (+) False LOC110528717
XR_005037338.1 mRNA downstream 127958 422280 ~ 426128 (+) False LOC118941071
XR_005037337.1 mRNA downstream 127958 422280 ~ 426130 (+) False LOC118941071
XR_005037336.1 mRNA downstream 127958 422280 ~ 426131 (+) False LOC118941071
XR_005037339.1 mRNA downstream 127958 422280 ~ 426131 (+) False LOC118941071
XR_005037340.1 mRNA downstream 127958 422280 ~ 426131 (+) True LOC118941071
TU1725647 other upstream 214137 76903 ~ 79946 (+) False LOC110528717
TU1725907 other downstream 40110 334432 ~ 335177 (+) True G1508964
TU1725947 other downstream 70605 364927 ~ 367431 (+) False G1508979
TU1726036 other downstream 148481 442803 ~ 444877 (+) False G1509015
TU1726040 other downstream 148481 442803 ~ 444877 (+) False G1509015
TU1726042 other downstream 148481 442803 ~ 444877 (+) False G1509015

Expression Profile